RNA id: XM_022680321.1


Basic Information

Item Value
RNA id XM_022680321.1
length 575
RNA type mRNA
GC content 0.49
exon number 5
gene id LOC103047439
representative False

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 11016029 ~ 11080184 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATTTCCGTTTCCTGGAGACGGCGATGTGTCCGGCGTGGGATAATCGAAGGGTAACCAGTGCAGTGTTTTGTACAGGAGAGTCGGGGGATGTTTACTGAGAGTGGAGTTGAGAGGAGGATCTACAATGGCTTTGTGTTTGACTGCGGTTGCTGAGCAGCTTCTGAAGGATGTACAGAGGGCATACTCGGAGAAATCCCAGATACCAGATGACCTACTTATAGCgttGCGGTTTGCGTTTGGCTCATGTACTCTTCAGGCCTTAGATCTGGTGGACCAGCGCTCTGTAACACGTGTGTCCTCTCCGAGTGGACGAGTAGCATTTCAGcttcatttgaattcaaaaatGTGATGGACACGCCCACACGCGGCAACCAAGAGGAGCAGCTGAATGCGTTGaagaaaagtgccagtggacacgtaCCATTAGAAGTCTTGTCCAGGTCTTGCTCCCACCCCAACGACCTGCCAGTCCAGGGGAACAAACTTATTGATTGTGTCCTGGTTGGTGTAGTTTGGTTTTATCAAGATAATTGTTGTCTGCTGGAGGTTTGATGGTGTTGTTAGCCACTGTGCAA

Function

GO:

id name namespace
GO:0000724 double-strand break repair via homologous recombination biological_process
GO:0005634 nucleus cellular_component
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU24186 lncRNA downstream 12366 11050256 ~ 11060895 (-) True G17921
TU24103 lncRNA downstream 218190 10854626 ~ 10855071 (-) True G17859
TU24078 lncRNA downstream 529654 10542505 ~ 10543607 (-) False G17845
TU24080 lncRNA downstream 530880 10540478 ~ 10542381 (-) True G17845
TU24030 lncRNA downstream 729998 10342796 ~ 10343263 (-) True G17808
TU24195 lncRNA upstream 5319 11085483 ~ 11090989 (-) False abr
TU24203 lncRNA upstream 66241 11146405 ~ 11147408 (-) True G17929
TU24310 lncRNA upstream 355272 11435436 ~ 11595509 (-) False LOC103044489
TU24311 lncRNA upstream 355272 11435436 ~ 11595509 (-) False LOC103044489
TU24312 lncRNA upstream 355272 11435436 ~ 11595509 (-) False LOC103044489
XM_022680293.1 mRNA downstream 121162 10884853 ~ 10952099 (-) True LOC103044364
XM_022680295.1 mRNA downstream 121163 10887104 ~ 10952098 (-) False LOC103044364
XM_022680282.1 mRNA downstream 733072 10329090 ~ 10340189 (-) False LOC103029242
XM_015608547.2 mRNA downstream 736360 10329090 ~ 10336901 (-) True LOC103029242
XM_007260076.3 mRNA downstream 794928 10267658 ~ 10278333 (-) True LOC103028097
XM_022667597.1 mRNA upstream 518 11080682 ~ 11083053 (-) False LOC107197924
XM_022680329.1 mRNA upstream 5316 11085480 ~ 11334518 (-) True abr
XM_022680332.1 mRNA upstream 5316 11085480 ~ 11292158 (-) False abr
XM_022680333.1 mRNA upstream 5316 11085480 ~ 11233524 (-) False abr
XM_007260374.3 mRNA upstream 5320 11085484 ~ 11116921 (-) False abr
TU24000 other downstream 825943 10246675 ~ 10247318 (-) True G17792
TU23805 other downstream 1510536 9562427 ~ 9562725 (-) True G17638
TU23350 other downstream 3066022 7929289 ~ 8007239 (-) False LOC103026934
trnat-ugu_80 other downstream 4084450 6988739 ~ 6988811 (-) True trnat-ugu_80
trnat-ugu_79 other downstream 4085002 6988187 ~ 6988259 (-) True trnat-ugu_79
TU24378 other upstream 604823 11684987 ~ 11685391 (-) True G18037
trnam-cau other upstream 1209519 12289683 ~ 12289755 (-) True trnam-cau
trnam-cau_1 other upstream 1209992 12290156 ~ 12290228 (-) True trnam-cau_1
trnam-cau_2 other upstream 1210695 12290859 ~ 12290931 (-) True trnam-cau_2
trnam-cau_4 other upstream 1211703 12291867 ~ 12291939 (-) True trnam-cau_4

Expression Profile