RNA id: XM_022680332.1


Basic Information

Item Value
RNA id XM_022680332.1
length 4460
RNA type mRNA
GC content 0.49
exon number 23
gene id abr
representative False

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 11085480 ~ 11334518 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CGTTGGCAGCTAGCGGCTCTTGCCTGCTGTCTTTTTGCttctctgtgtctgtttgtgtgtgtgagggagagagagagtgggagactGGAGCATAGCCTACACACACTCggatctttctctttctcccacatccttcctctctctttcttttctgtggCCGGACATGACCGCTCTCCATCCATGAAATCGAGCCTAAGCCTTGGAGAGAGCCACGTATAGAGAGGAGAGCGGGAGAGGGGGATAGCAGAAGAGAGCAGAGCAGTGGTAACGAGGGAGACGCAGCCCTGGAggattcagcgggtggtgggaTGGAGCGCCTGAGCTCCCGAGGGCTGCCCAGGCTCTCCTGGATTGACACACTCTACAGCAATTTTAACTACAACACGGATGGATATGAGGGAGATGGTGCGGAGGACAGGAAGTCTCAGGATGGCTCAGAAACGATGCCCTTCATCGACGAGTCGCCCACCATGTCTCCACAGCTGTGTGTCCGGCCTGACGGTGAAGCTGTGTCTCCTACACCACCTGAAGGTCTACTGCCTGGAGGGGACATCGAAAACTGTCTGGGGATGAAGAAGCTGGTGTTGTCTGGATTTCTGGCCAGTGAAGAGATCTACATTAACCAGCTTGAGGCCCTGTTGCTGCCCATGCGTCCCCTAAAGGCCACAGCCACCACCTCGAAGCCTGTACTGACCGTGGAGCAGATCGAAACCATCTTCTATAAGATTCAGGACATCTACgagattcataaagagttcTACGATGCTCTCTTCCCCAACATCCAGCAGTGGGATGATAAAGTCACAGTTGGCCATCTGTTCCAGAAGCTGGCCAGCCAGCTCGGTGTGTACAAAGCGTTTGTTGACAACTACAAATTGGCCTTGGAAACAGTGGAGAAATGCAGCCAGGCCAACTCTCAATTCCAGAAGATATCTGAGAATGTCAAAGTTAAGGGACCGAAAGACTCCAAAGACCGCACCACTACTGTCACCATGGAAGCTCTCCTCTATAAACCCATTGACCGTGTCACTCGGAGTACCCTCGTACTACACGACCTGCTGAAACACACTCCTAAAGAGCACCCAGACTTTGCTCTGCTGCAGGACGCTCTGCGCATCTCCCAGAACTTCCTCTCCAGCATCAACGAGGAGATCGACCCACGCAGGACTGCTGTTACCACACCCAAGGGAGAGGCGCGTCAGCTGGTGAAGGATGGCTTCCTGGTGGAAGTGTCTGAAGGTTCTCGTAAACTCCGCcatgtttttctctttactgATTTGCTGCTCTGTGCCAAGATGAAGAAGACTGCAGTGGGGAGGAATCAGCAGTATGAATGTAAGTGGTACATCCCCCTGGCTGATCTGACCTTTCAGACGCTGGACGACAGTGACTCCTGCCCGCATGTTCAGACCCTTCCTGAGCACGAGATTGAGGAGATGAAGATCAAGATCTCCGTCATCAAGAGCGAGATCCAGAAAGAGAAGAAAGCACAGAAGGGGCAGAGCCGCATCGTGGACCGCTTGAGGAAGAAGATGAATGAGCAGGAGTCATGGTTACTGCTGCACTCACCAACCATCCCGTTCCGCATCCACAACAAACACGGCAAGagttttgttttcctgctcTCCTCAGATTATGAGAGGTCAGAGTGGAGAGAAAGCATTCAGAAGCTCCAGAAAAAAGATCTTCAGTCGTGTGTGTTGAGTACACTAGAGCTTCAGGTCCTCACCAGCTCCTGCTTCAAACTGCGCACCGTCCACAACATCCCCGTCACCAGTAACAAAGACGaTGAGGAATCATCAGGCTTGTACGGTTTCCTGCACGTCATCGTCCATTCTGCCACCGGCTTCAAGGAGTCAGCCAACCTGTACTGCACTCTGGAGGTGGATTCTTTTGGCTACTTCGTGAGTAAGGCGAAAACCCGTGTGTTCCGGGATACCGCTGAACCACAATGGAACGAGGAGTTTGAGATTGAGCTGGAAGGCTCCCAGTGCCTGCGAATCCTCTGCTATGAGAAATGCTACGACAAGTCCAAGCTCAACAAAGATGATAACGAGATCGTAGACAAGATCATGGGCAAGGGCCAAGTACagctgGACCCACAGACGGTGCAGTCCAAGAACTGGCATGTGGACGTGATTGAGATGAACGGgATTAAAGTGGAGTTCTCCATGAAGTTCACAAGTCGGGACTTGAGTTTGAAGAGGACGCCTTCTAAAAAGCAAAGCGGAGTGTTTGGAGTTAAAATCAGCGTAGTGACAAAGCGTGAACGTTCCAAGGTGCCTTACATTGTGCGGCAGTGTATCGAGGAGGTGGAGAAGAGGGGAATTGATGAAGTGGGCATTTACCGGATCTCTGGTGTGGCCACAGACATTCAGGCCCTCAAAGCTGCATTCGATACCAATACCAAAGATATCCTGGTAATGTTGAGTGATATGGACATCAATGCCATCGCAGGGACGCTGAAGCTGTACTTCAGAGAATTGCCCGAGCCTCTGCTCACTGACCGCCTCTACCCAGCCTTCATGGAGGGCATTGCTCTGTCTGACCCAGCAGCCAAGGAGAACTGCATGATGCACCTGCTGCGCTCCCTACCCGACCCCAACCTCATTACATTCCTCACCTTACTGGAGCACTTAAAGAGGGTGGCTGAGAAGGAACCGATAAACAAGATGTCTCTGCACAACTTGGCCACTGTATTTGGCCCAACGCTGCTCAGACCCTCCGAGTCTGAAACCAGTAAGCCTCACATAACCATGGCCTCCGACATCTGGTCTCATGACGTCATGGCACAGGTCCAGGTGTTACTGTACTACCTACAGCATCCTCCCATTTCCATCGCTGAGCTCAAGAGGAACACACTTTACTTCTCTACTGACGTCTAGCACTccgaataaaagaaagaaagaaagagagagacagagagacttcCGCACTGTTCCATTCCCTCCAAACACCACAATCTATTTACTGTACAGAATCAGCCCATGCCACCGCAGGGGGCTCCAGTGAGAGGCTACATCCCCCTCCCTCCCAGCTCCCTGCTGTCCAGTCTCATGATGTTCTGAGCATGTGCGGAGAGAGCGGTGGCCACACCCCCCTGACCGGAGGAGAGCCGGAGCTAAACGAAGATGGAGCCTTTGACCTTTTCAGTTAGGGGTCAAGCACCCGATACCACCATAGGAGACAccaacacacatgcacacacactctcagacacacacacactatctgtACCCCTTCTACTCGTCTCTTTAAAGCTCCTGGGTGTAAAACAGGATGCTATGTTTCCACAGCAGCTGAAAGAGAGGTGATCTGTAGATGCTTCTCCAACACTCTGGCTCCTCTAAGGCTCAGCTCAGTGATGCCGGTGCAGAAGATGGCCCACAGTTCCACTCTCTAcaactttctttctgttttttttttttttccttccccaAATCAGAGGCATTCCATAAATCATGCAAACACCACATATTGTGTTCTCACACATGATTTGGCTCCAGTAACGGCCACGGTTTTGTTCTATGGCCTTTATGCACGTGTAAAGAGAAGTGTGCGCGTGTACGTGAGCGTCTTCTTAAAGACGATGCTCAGATTGGACCCTTTTGCTCTCAGTGGAGAATCCAGAAAGCGCCAGACGTCTCCTGACCGTTCCCAGGCCAAACCaccttatttattataaatatattctatatGTGTGCCTGTACAGTGCGTTACAGTTAGAGAACGACTCCGCCGAGTCTTTCGTTTGAAGTTTTCTTTTGGATAGTggctttttttaaactgcaagTTTCTCATGTATGGTCAGTACTGACTGAGCTGTAACTGTTCTGTAAACAAAGGTAAAACTAATAACAGAAGCAAAGGAAGAAAATACTTTGACCGCTAACTCTGgcagtttttttaaatctgattcCATTTTGTATGGAAGTAAATCATGGTATGCAATCTAGTGAGATTTTTCATCTTGGAAATATCCTTGTTTTGCAAAAGACTCTGATTTCCTTTCTTCGTCTCACTTGTGCAAGCCTGCCCGACGCATCCAGTGTAACCTATGGGATGATCTGTGTCCTTATCCTTACTGCATGTTCAGCTTGTCAATCAAAAACAGTGGGCAGGTTATACAAGAAGCTAAACCTCCACGTTgttcttcttcattttcttcttcttcttcttcttcttcttcttttttaatcaGACTGCTCAACTCCAACTCTCACTGCAGTGGAATAAGCAGACTTCTCTGCTGACAAAGCCAGTCACATATCCACAATAAGAACTGTAAGATATTGAATactatttgatattttttaatataagatTACAGGAAAATCAGTTGTATTTTACTTTTGTTGGAAAGATATTGAGTATACCGTATTAACAATAAGGGTAAATGTTGATGTGtacttttttcctgttttttagtaaaataaataaaaatgtgtacaaGAAACACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU24182 lncRNA downstream 5329 11072129 ~ 11080151 (-) True LOC103047439
TU24186 lncRNA downstream 24585 11050256 ~ 11060895 (-) True G17921
TU24103 lncRNA downstream 230409 10854626 ~ 10855071 (-) True G17859
TU24078 lncRNA downstream 541873 10542505 ~ 10543607 (-) False G17845
TU24080 lncRNA downstream 543099 10540478 ~ 10542381 (-) True G17845
TU24310 lncRNA upstream 143278 11435436 ~ 11595509 (-) False LOC103044489
TU24311 lncRNA upstream 143278 11435436 ~ 11595509 (-) False LOC103044489
TU24312 lncRNA upstream 143278 11435436 ~ 11595509 (-) False LOC103044489
TU24313 lncRNA upstream 143278 11435436 ~ 11595509 (-) False LOC103044489
TU24314 lncRNA upstream 143278 11435436 ~ 11595509 (-) False LOC103044489
XM_022667597.1 mRNA downstream 2427 11080682 ~ 11083053 (-) False LOC107197924
XM_022680318.1 mRNA downstream 5296 11033176 ~ 11080184 (-) False LOC103047439
XM_007260372.3 mRNA upstream 55497 11347655 ~ 11370382 (-) True aspa
XM_007260371.3 mRNA upstream 88844 11381002 ~ 11387605 (-) True LOC103046022
XM_007260368.3 mRNA upstream 109358 11401516 ~ 11566079 (-) True LOC103045102
XM_015608613.2 mRNA upstream 275806 11567964 ~ 11588327 (-) True akap10
XM_007260365.3 mRNA upstream 275806 11567964 ~ 11588313 (-) False akap10
TU24200 other downstream 1681 11076238 ~ 11083799 (-) True LOC107197924
TU24180 other downstream 5329 11016029 ~ 11080151 (-) False LOC103047439
TU24181 other downstream 5329 11016029 ~ 11080151 (-) False LOC103047439
TU24000 other downstream 838162 10246675 ~ 10247318 (-) True G17792
TU23805 other downstream 1522755 9562427 ~ 9562725 (-) True G17638
TU24378 other upstream 392829 11684987 ~ 11685391 (-) True G18037
trnam-cau other upstream 997525 12289683 ~ 12289755 (-) True trnam-cau
trnam-cau_1 other upstream 997998 12290156 ~ 12290228 (-) True trnam-cau_1
trnam-cau_2 other upstream 998701 12290859 ~ 12290931 (-) True trnam-cau_2
trnam-cau_4 other upstream 999709 12291867 ~ 12291939 (-) True trnam-cau_4

Expression Profile