RNA id: TU24200


Basic Information

Item Value
RNA id TU24200
length 2680
RNA type TUCP
GC content 0.55
exon number 5
gene id LOC107197924
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 11076238 ~ 11083799 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCACACAACCTGTTAACAACACACCGCCTACACCTGCAATACTCACCTACCCTGCTCACGTTcagggtttttatttatttatgaataacAAGTTTACATCCTCTACATAGAACACAGTTttgttacatttcatttatgttgtttatttgttctttttaatGCAATGTGTGCAAAAACAAAGTAACACATAGGAGTgttagaaaatattgatataaggaagtatcacaatattttgcacGCTTTGCAATAGTGTATCGATTTTTAAAAACCCGGTGTAGATCGCAGTTTTGTACTCtcattagatcccactgttctgataaaaagtaaaaaaaaattactctaTGCTAGTGATTTAAACAACTGCAATATATCACTTTGCTTACAGTAtgagaatatacagctctggaataaataagagaccacttaaaaattaagatttttttttttttttttttgttattttaccaaattgaaaacctctggaatataattatgAGGataatggatgatcacaagccataaaaaccaagctgaactgcttgaatttttgcaccaggagtggcataaagttatataaaagcagtgtgcaagactggaggagaacatgccaagatgcatgaaaactgtgattaaaaaccagggttattccaccaaatattgatttctgaactcttaaaactttatgaatatgaacttgttttctttgcattatttgaggtcttttttgttatttcagccatttctcattttctgcaaataaatgcacaccCATTTATCtattcactctcacacacctgtTCAGagacattttattaaaagacCACTATGCATTAAAGTGGAAGCACAGCTCAAACAACCCCCCACCCCAGACTAATTAAGACACGCGACCTCTTCACGCGCGCCTATAGTGAAAGTTTCGAGACTGCAGCCCCGGGGACGAGGGGTCAGAGCCATCAATCAACATCCCCTAAACACTTAAGGCCTCCTATAAAAGCCCACCCCACCTCTGCTCCCCACAACTCATCACaatcattcatacacacacacacacacacactcctccacacGACCCCcttcatccatacatccatcacCATGCAGAAGGACCTGAGCACCCCCACCAGCCGCTTCTTCATATGGCGGGACTACCTAAATCTGAGGGACACCCTGGAGCGCGTGCTCCAGCAGTCCAGGCTCGAGGATGTGGGACCCCAGCCCCCCACTCCCATATCCCCCGACCACTTCCATCTTACTGCCCGGGACAGAGCGAGAAGCCGGGGGCCAGCAGGACCAGGGAGAGGCGCTGTCTCAGAGCAGCGGAGGAGCGGAGAGTGGAGAAGAAtTGTTTTATGCACCGGTCCGAACCGAGACGCCCCCTAGTGTCCGCGAGGGCTCCTGCGCCTTCTGCCGGCGGAACGGTGAGAGCACCGAGGTGTACCGGAGCCACCGGCTGCGCAGGCGGGACGGCAGGGTGATGTGCCCCGTGCTGCGGAGCTACATGTGCCCGCTGTGCGGAGCCACCGGAGACACCGCGCACACCCGCCTCTACTGCCCCAACAGGAGCGACACAGAGCCGCGCCGCAGCGCCGCCCACAGagaaaagacagtgagagaaaaagcGCGTGACTGAATCACTACTGCACACGAGTCTCAAACACCACCATAAGTGCAATGGAGTTCATGTGCAGGTTTTAAACAGTGTGTTCTTCTCCACAGAGCTTCTGTACAGTTTATATAAAGCCTTATACAAAGCCCCAAGAAACATGCGCGGCTGCACGCTGTTCTGAAGAGTTTTATACAGGaaattttttttcatgttttttctgttgtttgctgttttgtacaaaataaagaaaagttttCCTAATGCAAAACATCTCGCTCTCTGTCAGTCTAAACTGAGAATTCAGGATGTCAATAACTGTTTATTGCTTTAACTATATCAAAAAACAGTGAACAAAAGTAGagtataataataactaaaaacatagaCGTAGCTAAATAAGTTAAGTATGATAGTCTACCTTATTATTAAAGCTAATGCAATAACcacaaactaaattaaaataatgtttgatacacctaattaaaataattaaagttaCAACCCAGTTAGTTTTTTCCTCCTCTCCTGTAATAAATAGCCACACTTCTTATTGCCTCTGTATTTAGCTACAGATAGCACTTCTCCACTAGATGGAGCCACTGACTCatatttaattcataaaataaaacctttattttttatacttcaaAATATGATTAGACTAGATATAAACGTTAAGCTGTGCTTttgcttttctctcttctctcgctttgatttattgtacattgcatgcattaataaaaacttaaattatataaaagtgtGCAATATTATAGAGTAAAATCTACTTAGCAAACAGAGATAGTTATCACAGTGGTGTCTACTTCCTTATCTTCTTCATaagattacattaaaaaaaaaattctaaacatttaaacagtatGGTTTAAATACTGGTGATGGCTAATTGGCTTTGCAGCTCAGTGCTCATGTTGGATGGCGCTCCATCACTGCAGAGAAAGCGCTggactgtggagcagtggagattTATACCTTTCTGTTCTGCGTGTGGAATAAGGCCtattatagtttatagagattacacaagctgtgtgtgctAATTGTGTGCAGTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU24186 lncRNA downstream 15343 11050256 ~ 11060895 (-) True G17921
TU24103 lncRNA downstream 221167 10854626 ~ 10855071 (-) True G17859
TU24078 lncRNA downstream 532631 10542505 ~ 10543607 (-) False G17845
TU24080 lncRNA downstream 533857 10540478 ~ 10542381 (-) True G17845
TU24030 lncRNA downstream 732975 10342796 ~ 10343263 (-) True G17808
TU24195 lncRNA upstream 1684 11085483 ~ 11090989 (-) False abr
TU24203 lncRNA upstream 62606 11146405 ~ 11147408 (-) True G17929
TU24310 lncRNA upstream 351637 11435436 ~ 11595509 (-) False LOC103044489
TU24311 lncRNA upstream 351637 11435436 ~ 11595509 (-) False LOC103044489
TU24312 lncRNA upstream 351637 11435436 ~ 11595509 (-) False LOC103044489
XM_022680293.1 mRNA downstream 124139 10884853 ~ 10952099 (-) True LOC103044364
XM_022680295.1 mRNA downstream 124140 10887104 ~ 10952098 (-) False LOC103044364
XM_022680282.1 mRNA downstream 736049 10329090 ~ 10340189 (-) False LOC103029242
XM_015608547.2 mRNA downstream 739337 10329090 ~ 10336901 (-) True LOC103029242
XM_007260076.3 mRNA downstream 797905 10267658 ~ 10278333 (-) True LOC103028097
XM_022680329.1 mRNA upstream 1681 11085480 ~ 11334518 (-) True abr
XM_022680332.1 mRNA upstream 1681 11085480 ~ 11292158 (-) False abr
XM_022680333.1 mRNA upstream 1681 11085480 ~ 11233524 (-) False abr
XM_007260374.3 mRNA upstream 1685 11085484 ~ 11116921 (-) False abr
XM_007260372.3 mRNA upstream 263856 11347655 ~ 11370382 (-) True aspa
TU24000 other downstream 828920 10246675 ~ 10247318 (-) True G17792
TU23805 other downstream 1513513 9562427 ~ 9562725 (-) True G17638
TU23350 other downstream 3068999 7929289 ~ 8007239 (-) False LOC103026934
trnat-ugu_80 other downstream 4087427 6988739 ~ 6988811 (-) True trnat-ugu_80
trnat-ugu_79 other downstream 4087979 6988187 ~ 6988259 (-) True trnat-ugu_79
TU24378 other upstream 601188 11684987 ~ 11685391 (-) True G18037
trnam-cau other upstream 1205884 12289683 ~ 12289755 (-) True trnam-cau
trnam-cau_1 other upstream 1206357 12290156 ~ 12290228 (-) True trnam-cau_1
trnam-cau_2 other upstream 1207060 12290859 ~ 12290931 (-) True trnam-cau_2
trnam-cau_4 other upstream 1208068 12291867 ~ 12291939 (-) True trnam-cau_4

Expression Profile