RNA id: TU24203


Basic Information

Item Value
RNA id TU24203
length 966
lncRNA type intronic
GC content 0.40
exon number 2
gene id G17929
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 11146405 ~ 11147408 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTGAAGGAAAATCAGCAGTGGAGAAAGGTGGCTGAACTTAGAAACTTTAAAGACAAGTTGTGTGGCAATGTTCTGGAACTGCTAATTCTGTTATATCTGTCTATCAGCACTCGAGTTGGTTTTATAGTTGTACAGCTGTGTTATTCATCAGGCATTTGTCaaattctttatatttttatgagttaaggaacaaaacaaaataatactgtaaaactgtTGATCAACATGAAACATTGATAATAAGGCTTATGTAATTAGTGACCTTATGCCTTTGAGTGAATACTTTCTGCATTAGCAGGTACGGTAGCAGATTTACTTGGATTGTCTATTAGAGATGCCTTATAGATGCTCACCCAACATTCAGATGACATTCAACaaacattcaactgaatatctaacaaatgcaactgaactctcagctgaatgtaaatacatttaaagcttAAACATTAATTCAACagaaaatcatttacattcaactaaaagttcagttgcatttaatgaacatttagttgaatgttaCTTGAGGCTCTACAAGGCATTAACAATGTAATAAAGTGTTATTGCATGTGCATCTGTAACATAATAACTCTGACCTGGTCACTGTGCTGCTTTATTGGCCCTCAGACCTGGACCTCACCCCACCCGGACCCCCCCTCCACTGTCCCTGCGGAGGTTCACTAGGCCGATCTGATCCAAGACCCCTCTCAGCTTTGCCCTTTGACCTCTGACAGCCTTGTGTTGTTAGCCTTTACAACATGCCTGCCCCCCTGCTcatttctccttctctccttctctctctttctctccttctctctctctctctctctctctctgctcatgctttctaatctatctaatcCGTAACCAGATCTGTTTGAACCCTTTCCCAAAGGATGGAGGGAGGtagagaggagtgaaggagaaagAAGTGGGGGGGAAGAGAACAAAGCTGACTTTTCCTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU24195 lncRNA downstream 55416 11085483 ~ 11090989 (-) False abr
TU24182 lncRNA downstream 66254 11072129 ~ 11080151 (-) True LOC103047439
TU24186 lncRNA downstream 85510 11050256 ~ 11060895 (-) True G17921
TU24103 lncRNA downstream 291334 10854626 ~ 10855071 (-) True G17859
TU24078 lncRNA downstream 602798 10542505 ~ 10543607 (-) False G17845
TU24310 lncRNA upstream 288028 11435436 ~ 11595509 (-) False LOC103044489
TU24311 lncRNA upstream 288028 11435436 ~ 11595509 (-) False LOC103044489
TU24312 lncRNA upstream 288028 11435436 ~ 11595509 (-) False LOC103044489
TU24313 lncRNA upstream 288028 11435436 ~ 11595509 (-) False LOC103044489
TU24314 lncRNA upstream 288028 11435436 ~ 11595509 (-) False LOC103044489
XM_007260374.3 mRNA downstream 29484 11085484 ~ 11116921 (-) False abr
XM_022667597.1 mRNA downstream 63352 11080682 ~ 11083053 (-) False LOC107197924
XM_022680318.1 mRNA downstream 66221 11033176 ~ 11080184 (-) False LOC103047439
XM_007260372.3 mRNA upstream 200247 11347655 ~ 11370382 (-) True aspa
XM_007260371.3 mRNA upstream 233594 11381002 ~ 11387605 (-) True LOC103046022
XM_007260368.3 mRNA upstream 254108 11401516 ~ 11566079 (-) True LOC103045102
XM_015608613.2 mRNA upstream 420556 11567964 ~ 11588327 (-) True akap10
XM_007260365.3 mRNA upstream 420556 11567964 ~ 11588313 (-) False akap10
TU24200 other downstream 62606 11076238 ~ 11083799 (-) True LOC107197924
TU24180 other downstream 66254 11016029 ~ 11080151 (-) False LOC103047439
TU24181 other downstream 66254 11016029 ~ 11080151 (-) False LOC103047439
TU24000 other downstream 899087 10246675 ~ 10247318 (-) True G17792
TU23805 other downstream 1583680 9562427 ~ 9562725 (-) True G17638
TU24378 other upstream 537579 11684987 ~ 11685391 (-) True G18037
trnam-cau other upstream 1142275 12289683 ~ 12289755 (-) True trnam-cau
trnam-cau_1 other upstream 1142748 12290156 ~ 12290228 (-) True trnam-cau_1
trnam-cau_2 other upstream 1143451 12290859 ~ 12290931 (-) True trnam-cau_2
trnam-cau_4 other upstream 1144459 12291867 ~ 12291939 (-) True trnam-cau_4

Expression Profile