RNA id: XM_007252920.3


Basic Information

Item Value
RNA id XM_007252920.3
length 8618
RNA type mRNA
GC content 0.46
exon number 18
gene id LOC103026436
representative False

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 30449364 ~ 30512826 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCACGCGCACGCGCGCGCACAGAGCCGCTGTCTGCAGGGTGGAGACTGGAGCTGGTGTCTGATCCGAAGCtgcgggaggaggaggagatgcaCGGAGGCCGCGCGCACTGACGGCGGCCAGGAGGATGCAAAGGGGTTTCCCCGGAGAGTAAAGATGAGTGTGACATCATGGTTCCTGGTGAGCAGCTCGGGTACCCGGCACCGGCTGCCACGGGAGATGATTTTTGTGGGCCGAGAGGACTGTGAGCTCATGCTGCAGTCTCGCAGTGTGGATAAACAGCATGCGGTCATTAACTACAACCCTGCCACAGACGAGCATCTGGTCAAAGATCTGGGCAGTCTCAACGGGACATTTGTCAATGACCTGAGAATTCCTGACCAGACCTACATCACCCTGAAGCTGTCTGACATTGTTCGCTTTGGATATGATTCTCATGTGTACGTCCTTGAGAGGAGTGAACACAAAGTCCCAGAAGAAGCACTCAAGCATGAGAAGTACACCAGTCAGCTGCAGATGGGTTTAAAGTCCTCGGAGGATAAGAGGCCAGAGCTGCAGGATGAGAAATCTAAACTCGACAAATCAGAACGCAAAAGCCTCACAGACGCCCCAGTGCCTCGTCCCACACCTCTGTATGGCCAGCCGTCTTGGTGGGGAGAAGATGACTCTGGAAAAGATCCACAGATGGAAGGACCCAAGTCAGATGACTGCCGCTCAGACCTCCAGAAAGAGGGGCCTGTTGCTGAAACCGAGGTTAACGGCTCTCTTCAGGAGTTCCGCGATAGCCAGGGCAAGTCCGTGTTTCTGTATAACAGAGAGCCCAGCTATTTCGAGATTCCCACCAAAGAGGTCCAGACGCATCCCAAGTCCCTGACCGTGGAGCTTAATGACATACCAACCAAAGACACTGACAGCCCCCCCACTTCTACACCACCGGTGGTCCAGAGTCACGCCTCCTTCACCATCGAGTTTGATGAATGCACACCGGGGAAGATCACAATCAAGGATCACGTGACCAAGTTCTCCTCTCGTCAGCGAGGTAAACAGCAGCAGGGCGGTAAACCTCTGGGTGCGGCACCTACGGAGGTTTTATCGGCTGAGAGCAAAGTGGCAGACTGGCTGGTGCAGAGTGATGTCAGCATGATGCGCAGGCGGCCACCGTGTGACGACGTCTATAGCACCAAGAGTGACCTCGCTATGCAAATAAAGACGCTCAAAGGTCACCATCATGAGGATGGTACTCAAAGTGATTCAGAGGATCCTGTAATGAAAGGAAAGCGGAGCAAGTCGCAACACTCTATTCAGTCACAGCAGTCAGTCCAGTCTCAGCAGTCTGTCCAGTCACACCAGTCTGTCCAGTCTGTCCAGTCAATCCAGTCACACCAGTCTGTCCAGTCACACCAATCAGTTGTGACCAAAATTTCTGGGCCGCCTAGTTCAATGCCGCACCAGCCGTCCGTTTACTCCCAGGAGGCCTACCACCCTCAGGCCTTCTCCCCGCCTAAACAAGCTCAGGACCTTCCCATTGGTCCTGAGGGAACTGACGAAAGGCCTGTACAGGAAAAGCCCCCTCCCACTCAAAGCCAGGAAAAGTCTGGACACCCTGAGAACCTCATCCAGCAGGCCTTTATCATCGAGTTCTTCGACGACAATCCCAGAAAGAAGCGTTCGCAGTCTTTTACCCACAATCCAGCACACGCTGATACCTATTCTGCCCTCAAGGCCAAGCTGGAGCGCCGTAAGGGTGGAGTTCATGGCGAAAGGCCCGCCTCTATTCATGGACATATTCCTCCCACCCAGCAAATTACAGTCCCTCTAAAAGGCTCCAGTAACAGTGGTCCCCAAAGGTCCAGCTCTCTGAAGAGGGAGAAAACTGAGGAGGCGATGAGCAAGAGCAGCTCATCCCCTTCCTCCTCCGGCCCGTCCTCTCGCTCCTCTCCGGCTATTACCATCAAGCCTTTCGGCAGCATTGGCAAGAAGTCCAAACTGGCTCAAGAGTTTGCTTCTGAGTTTCTTATGGACTCAGAACGGACATCCCCGCCACCCATGTCTGCACCGCCAGTGATGATGTCCCCATCTCACACTCATCTGCCCTCCCCAGCTGAACCTCACGGGCCCTCCTCTGTGTCCTACCCGTCCTCTCCGTCCCAACTACCTATAATGCCCCAGCCACTTCTACCTGTCTCTGCATCCGTTCCTGTGACCGTCCCTATCCCCATCCCATCCCACCCTCCTGCTCTGGGTTCAGTCTCTAGTGCCTCCCCTGGGCGCTCGGCAGTGCCTCAATTTTCTCCACTGGGAGTCACAGGGGTAGATCCTAAGGCATCCAGGGCAGTTCGCACAGAGGAGGAGGATAGCTTGAGTGATGCTGGTACCTACACTATTGAGACCGAGTCTCAGGATAAAGAGGTGGAGGAGGCTCGGAGCATGATTGATcagGTATTTGGGGTGCTGGATGCCCCGGAATACAGTGGTCAAACCGTTGGGGTTTACAGGCCTGTGATTAATGAGCAAGCAATCTATAGTCATTCACCGGGTGGACCTGTTGACCTCATGCCACCATCAGCACAAGAACTTGGCCCGTGCCTCAGTGGTGATCCTGCTGACATGATGCAGGGAAGTGCTGAGCTGGGGGGACCTAAATGGGTGTCTCGGTGGGCAAGCCTGGCAGACACGTATACCGAACCTGGAACACAGGCACCTCCCGGCACTTCACCACAAGGCGGAATTGTTACCAGagATGGCAGAGTTGTAATGATGAGTCAAAGTTTGGATCATTCAGAATCAGAGTGCAGTCATAGCTCCAGGACCAGAAGACTTCTTCCCCAGGTCCCGCTTACTGGAGAAAAGCAGGACAGCTCCACACCAAGCATCTTAATACGGCACGAACCAAACCTGGATCATGAACCTCCAGAACGAGGCTCCAGAGCACCACAGCAGCAGGACTCTACCCAGAGATTGCGTGTCCAAGACGATGTTGATCACGACAGCCTGAGTGACACCAGCCGCTCGGATGACAGCTCTATCCTTGACAGGAGCGCAAGGAATCAAAGCCGACGTGGAACTGCTGCAACCTCACCTCTTGAAAATGCACCTCATTCTAGGAGTCAGGATACCTCTGCAGCCACACCTAAATCTACTTCTTTCTATATTGGTTCGGAGGACGGCTCCTGCAAGTCAGATACTTCCCGAAGTCCTGTTCTGTCCCAGACTGAGAGAGATCTTTCTCCCAAGATGCCTCCAACCACTGTCTTAATACGACACCTGAGTAGCCATGAGCCCAGGAGGCCAGTCAAGCCCAACTCCTCAGCACCCAACCTCCAGACCCAAGACAGGGATGCAGTTCCCACCAAAGAGCTCCAGTCGTCCTCTTTCGTCCGTCAAGAGAGCTTCACCAAAGATCGGCCTAGTGACAACattcaagtcaagaggcttccACACATCTCTAGTCACCCCACCTTAAGGAACTTGGGCACAGAAGGAAGTGACAGAGATTCTTCTGCTTTACCCAAAGAAAAGAGGTCTTTGGTGTCTCCAGAGGGAAAGCAATCAGCGCCCACTCCGCGGTCTAAAAAGGTGAGCCCGCCTGGAAAAGCAGACGAGTCTCTGTCTGGTGAATCAGACGTAGACACTGCTAGTACTGTGAGCTTGGTCAGCAGTAAAAATGTCCCCATCAGCGTGCCCAAGAAACGGACAACCGCAAGCACAGCCCGTAAGGACAAATCCTCCAGTGCCTCCACCCAGGAGAAAAACAGACAGCCAACTGCACGTGAGCGACTTTCAGAGAAACGTCGCAGCCACCCCACTGCAGAAAATGCCGGAAAAGCTGAGTCAGCCCGCCGCCTTCAGTTACGACGCAGTGCCGGTAACCGTGGTTCATTAGATCTCTCTGAGAACCAGCAGAGCCACGGCCAGCAGCAGTGGACTGACGCTGCATCGTCCGACCACGAATCGGCCTCACGGCCGGCCAGCCGCAAGAAGCTGACTGCACCCCTGCAAAAAGAAGATTCCAGCAAGTCAAACAAAGCAAATAACCAAGTGTTGACTCGATCCAACAGTCTTTCAGCCCCCAGACCCACCCGAGCCTCTATGCTGCGCCGAGCTCGCCTAGGAGAGACTTCAGACAACGAAGGTGCAGAAACTGACCGTGGCTCACAGAGTTCAGAGCAAACAAAGATCCCCGGCGATGCAAAGAAGCTGTCAAGGCTTGATATTCTGGCCATGCCCCGCAAGCGGACAGGATCCTTCACTGCTCCCAGTGATAATGAATCAACTACTGGTAAACCTGGCGTACCCAGCCGTCCTGCTGAAACAAACAATACTGGGCGAAGGTTATCTTCAGGAGAACCAAAACAGGCCACTGGGAAAGGCACACATCCCTCTACCCGCACACGCACCACCCAGCCTAAGCACAGTACTACAACCAGTTCTCGCCGCAGACAGAAAGGTTCAGACTATTCTTCTACCTCAGAGGAGGAGTTTGAAACCAGTTCCAACTCTAAACACAGACGCTCTCATGCGTCAGCCTCCACACAGACCCAGACACCACAGAAAACCGCCCAGCCTCGTCCGAAGCCCATCTCtctggaggtggaggaggatgaGTCTCAGAACGAGCACTTTCAAAACTGGTCTACTCACAGTGCCGAGATTGCCAGGTTGAGTCAAGATCTAGCCAAGGATCTGGCCATCCTTGCTCGTGAAATACATGATGTAGCTGGAGATGGAGACTCTCAGACATCTTCAGGCATGGGAACCACCACCTCTCCTGGCTCCATGCCCAACACTCCGGCTTCTACCATCTCTGCCAGAGAGGAGGTCATTCTGGACAATTTGATGCTGAACCCAGTGTCTCAGCTCTCCCAGGCTATCCGAGAGAACACAGAACAGCTGGCCGAGAAAATGAAGGCATTGTTTCATAATAAGACGGAGGTGTGGGAGGAGATTGAAGCAAAGATCAACGCTGAGAATGAAGTTCCCATCCTTAAAACCTCCAACAAAGAAATCTCCTCAATCCTGCAGGAGTTACGGAGAGTCCAGAGGCAGCTAGAAGTGATCAACACAATTGTAGAACCGGGTGGAACCCTGAAGCTGCCCTCAGAGCCCGCAGCACCGGCAGCAAAGAGCAAGCCATCCTCCAGGGAGTTCTCCAGCTCTGCtggcgctaatgctaatgctagtgctaaAAAAGGGAGCAGAGGGAAGGAAACAGAGCGCTACGGTGTGTGAGTGCTCTACCTGTGCTGCACCCCCTTATTGAAGACTGCCCCCTGCAGGGCACTAGTACAACCATCGTGATTCTGTTCATACTGTATCATTACTGGTGGAAATACTGTTACGCTTTCTAGAGTTCTGCTGCTGCTACGCTGCACACACTAATGTAAAGTTAGgcaaaaaaaagctgttttaaatgtgtgttaggcACCAATTCCACAGCGCCCCATGGAGGACCTGAAGAGCGATCGCTGTAGGATCGAGAGAACCGTGTCCAGAAAGCTGAAAAAGGCGCATCCATGACCTGCCTCAGAGACTGGCTTATTCTTCATCTCTGCTGTGATTGTCAGTAATCGTAATTTATGCTAAAGATGTTTTTGATTGTTGTGGACGGTGAATGATAATGAGTTAgaatgttgttgttattatgattatttattaatttattttttacagcagtGCTTCTGAGAATATCACCTGATCTCCTTGCTGATTAGTCAGAGCTAGGCctgccacaataattactgtGAAATTAATGTGAAAGCGCCAGTATATGGGCCTGTTTAAGAAAAACTgggttgttttatttatttattttttagaataattatttgggatgttatttattatttcatcaggatttgtatatatgttatataggaATTTGAATATTCTTAACAATTTAAAGTTCATTGcactttaaaagggtgtaactGCATTAATATAgtagtatattaataatattatatcagtggcataaaatagtCTTATAATCACACAATATATCAACAATGTGGACAACTATATGTTGTTGTAAAAAGCgtatagttattgtgacaggcctagtcagGGCTGTTCTGAAGTCGTGTGCTGTTTACTGTAAAAGTCCAGAGAACACAGAtaagataaacaaacacaaacattccCTTATAAATATGAATCTCGTATGCCTTccagaaggtgtgtgtgtgtgtgtaggtgaggAGCTGGATCAGTTTGAGATAGAAGTGGGTGTGTAGTGCTGTGCTCTGTGTGAGTTTGGAAAGTATGACTGGGTGTTTATGGGTCAGTGTTACTGTAAGGATGGGACTAAATTGAATAAGATActgcaaatgtttaaaaaacactgatacaCATTGTTTTTGCAGGAAGAAAAAACAGGAGATGAACAAATATGGTAAATGTATGCATATATTAGAATGATTAAACAATGTATTTATGATTGGATTGTATACCATGGCATGCAGGAGAACAAAGCACCTTCtaactttacttttaaaatatctaaaactgCATTTTACGTCTGGTCACTAAACAGTCCACTTAACCGtgaacccaaaaaaatacaataaattaatcgtcactgtccaaactttaaaacagcaactttaaggaacagtttgtgtgttcaaattatataatgaactaaaatagacaaaaattgGACCATTTTAATAGTCTTTATTTGGAATCTTGTACATTTCTGTTCCACTGGAAGAAAAATTGAAAGATGGCTTCCTTACAGAAATACAAGATGAGTACATAAAGTAGCTGTTAACATTTATGTTATgttagactgtgtgtgtgtgtctgggtatGGGTCACTGGTACAGTAGCACTATAGTTTGATTTTTAGACCTGAATCTTGGATTTATAGGTCTGTACTTATAAAGTCTCTCAGAGCAGAAAAGCTGAATTTATTAATGTAAGatataataaataagagacAGATCACCCCTTCTAGGAATACACTTAAGACTAAAAACATACACCCTGAGATGTGAAAGTTGTTAGATACACCCTAACATGTGagggcttttattttttcccgaAGATGTGGAAGCTTGTAGTAACATCTGTGAGAGCTTTCACATAACCCCTAAAATGTGAGAGCTATTTGCACCCTAAGATGccagtttttattttagagcttttatttacacCCCAAGATATTAGAGCTTTTAGATACACCCTGAGATGTGAAAGATTTTATTTCTCTTGAGAAGACCTTTTAGATATAACCTGAGGTGCAAGAGCCTTAGTTACACCCAAGCACATCTTGCTCCTGCACTCTGAGAGACTTTATAAACTCTGGCTGGTTATAATAGTGGACGGATATAGTACCATTCCTTTCTGTAGAAAGAGAATCCCATCACAAAGTTTTAACAATCAAATGTTTCTTCaatcaaatatgttttttatggttCTATATAGAACCATCATTGCCTTTGATTATAGAACCCCCTTTTTCAAAATAATGTATGAGAATGTGTTCCTGTCCTCCACTTTAAATCAGAAGTAAtgttataatattaatgtattttgtgGTTTAGTTTGAATGTCTTTGCAGAAAGTCTTCATACTGGCTGTTGAATGTTTTTTGTGTCTAAAATTAGCATAATCCACTTTTAGCTGCAGGTCATTTCACCtgatctgttaaaaaaaatcgcGATTCAGTTGCGTTCTCTGAAGGAGCACACTCTGAAAGTTTGTCTTTTAGCgaataataaatttaaaacatttatttagcttaaaatcttaaaagtgATGTTCAAATTCAATtatctttaaaatgaaaatgaaaaatccaGATGTTAAGACTCCGAAAAAACTAGTATTCTAGTACTGAGCTACAGTACTGGAATACTGTGCTACAGTATTAGAGTACTGAAGTGAGCTGTTTATCAGAAAGTGTtggtttgattgtttgtttgtttgcttggttCGAGtgctgtgaaggtgtgtttgAAATGCAAAGAAGAGCTCCtgaatttattttgtgcagCTGCATGTGTAACTCAGCGGGTCAAGGCTTGAGCTTCTTCACCAAACGTGCTTTTATTTATGTGAGCTGAGTGGACAGATGTTCCAACAACATTTGTACTAAATAAACCTATTAATTTAATGATCAAAAGCAGAAAATACGACTGGAGAAACACTTGTACATTTCTAAATaggagttatttatttatttgttctttcactgtttttttatgcactATATCCACGCTGCTTTACTGGCTttattaatgtgtgtttgtttactcTTCTTTTTTGTTGTGAGGGGGCGTGTTTATACTGTCCAACTGTAATGTGATTGGATGCATCCTAGTGTTAAGATCATCTAAAATGTTGGAgagagtgtgttcagtgtgctGCTCACCCGACCGTTTAAGAAACGTCTTTGGGAACGCTTTCCCATATCACAAGTTTAATTAATTCTGTTAATATTCTACATCTgtaatcttattattatttgtttttttacttttttaagttattgcAGTTTTTGCTTGCATTACGCAGCGCTGCACCACCAGACACAGATTGTTATTTTGCTCACCGTTTAGACTGTATGTGATTTTTCATcacatttataataaatcaGTTTCAGTCTTGTGCTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU30504 lncRNA upstream 35352 30440505 ~ 30446957 (+) True G22614
TU30449 lncRNA upstream 177693 30304295 ~ 30304616 (+) True G22576
TU30427 lncRNA upstream 217019 30265025 ~ 30265290 (+) True G22558
TU30425 lncRNA upstream 217663 30264370 ~ 30264646 (+) True G22556
TU30284 lncRNA upstream 476815 30000115 ~ 30005494 (+) True G22456
XR_002651834.1 lncRNA downstream 3369 30516195 ~ 30519886 (+) True LOC111195805
TU30523 lncRNA downstream 21502 30534328 ~ 30535041 (+) True G22626
TU30532 lncRNA downstream 57601 30570427 ~ 30583460 (+) True G22635
TU30535 lncRNA downstream 73639 30586465 ~ 30586802 (+) True G22636
TU30540 lncRNA downstream 101711 30614537 ~ 30614862 (+) True G22638
XM_007252921.3 mRNA upstream 1969 30450102 ~ 30480340 (+) True LOC103026930
XM_007252963.3 mRNA upstream 49019 30414115 ~ 30433290 (+) True ylpm1
XM_015606807.2 mRNA upstream 49019 30414115 ~ 30433290 (+) False ylpm1
XM_022684138.1 mRNA upstream 88535 30375618 ~ 30393774 (+) True LOC103040669
XM_022684141.1 mRNA upstream 88536 30375618 ~ 30393773 (+) False LOC103040669
XM_022684208.1 mRNA downstream 559321 31072147 ~ 31076057 (+) True LOC103029213
XM_022684220.1 mRNA downstream 570679 31083505 ~ 31089458 (+) False LOC103029526
XM_007255518.3 mRNA downstream 570679 31083505 ~ 31088532 (+) True LOC103029526
XM_022684227.1 mRNA downstream 586745 31099571 ~ 31103340 (+) True LOC103029852
XM_022668586.1 mRNA downstream 608569 31121395 ~ 31149177 (+) True plb1
XR_002651820.1 other upstream 219416 30259308 ~ 30262893 (+) True LOC111195794
XR_002651821.1 other upstream 219416 30259308 ~ 30262893 (+) False LOC111195794
trnav-aac_1 other upstream 1091697 29390540 ~ 29390612 (+) True trnav-aac_1
TU30023 other upstream 1493478 28988568 ~ 28988831 (+) True G22276
TU29918 other upstream 1836030 28645061 ~ 28646279 (+) False LOC111192074
TU30785 other downstream 981519 31494345 ~ 31494898 (+) True G22834
TU31098 other downstream 2309518 32822344 ~ 32826939 (+) True G23086
XR_002651887.1 other downstream 2324226 32837052 ~ 32841326 (+) False LOC103042732
TU31174 other downstream 2563828 33076654 ~ 33081862 (+) False LOC103037425
TU31552 other downstream 3381549 33894375 ~ 33922851 (+) False cnksr3

Expression Profile