RNA id: TU31062


Basic Information

Item Value
RNA id TU31062
length 445
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G23057
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 32522014 ~ 32527724 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTTACAACTGTGTATGCTCAAATATACGTCAATATATTCCCCCCTCTGAGGCTTGAAAAgcctcaaaaaagaaaaaacaccccaaacagagacagaagcaaAAAATGCCTCCAAGCACACTGCAACTACACAGTGTGTGAGAGCAAAAAATATATCCAGCAGCCATCCAGCCGATATGTGTAGCGCAAGGAATAGGAAACACTTGTATAATGACAAATCAAGCAAATATAACAGAAAACcccagaaaacaaaataaacatccaCCTTCAGGCTGGTCGACCCATCGGACCATCCAGTGAACCTCTCCCTGCCTAACATCACTGTCCCTAATgcgagaaaaagaacaaaacaactgGGGTCCCAAGAGACATACTCAAGAGTAGCACACAACATTTGCCAAATGATTCAAATGTGACGTTTACAACTGTGTATGCTCAAATATACG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU31058 lncRNA upstream 29273 32492255 ~ 32492741 (+) True G23053
TU31022 lncRNA upstream 164761 32356637 ~ 32357253 (+) True G23022
TU30913 lncRNA upstream 729120 31789672 ~ 31792894 (+) True G22937
TU30801 lncRNA upstream 973914 31547750 ~ 31548100 (+) True G22845
TU30800 lncRNA upstream 974497 31547192 ~ 31547517 (+) True G22844
TU31086 lncRNA downstream 184148 32711872 ~ 32716445 (+) True G23075
TU31123 lncRNA downstream 309334 32837058 ~ 32841346 (+) True LOC103042732
TU31132 lncRNA downstream 366517 32894241 ~ 32894650 (+) True G23116
TU31181 lncRNA downstream 555918 33083642 ~ 33169392 (+) False LOC103036694
TU31326 lncRNA downstream 644645 33172369 ~ 33172714 (+) True G23251
XM_007255485.3 mRNA upstream 691850 31824231 ~ 31830164 (+) True atp6v1d
XM_007255487.2 mRNA upstream 705900 31803424 ~ 31816114 (+) False rbm25
XM_022684394.1 mRNA upstream 705900 31803442 ~ 31816114 (+) True rbm25
XM_022684398.1 mRNA upstream 705900 31803792 ~ 31816114 (+) False rbm25
XM_007255489.3 mRNA upstream 739795 31767544 ~ 31782219 (+) True slc35b2
XM_022684492.1 mRNA downstream 64146 32591870 ~ 32691661 (+) True LOC103043556
XM_007255470.3 mRNA downstream 326358 32854082 ~ 32890441 (+) False extl3
XM_007255471.3 mRNA downstream 337243 32864967 ~ 32890441 (+) True extl3
XM_022684546.1 mRNA downstream 403886 32931610 ~ 32970019 (+) False kif13b
XM_007255458.3 mRNA downstream 403886 32931610 ~ 32970019 (+) False kif13b
TU30785 other upstream 1027116 31494345 ~ 31494898 (+) True G22834
XR_002651820.1 other upstream 2259121 30259308 ~ 30262893 (+) True LOC111195794
XR_002651821.1 other upstream 2259121 30259308 ~ 30262893 (+) False LOC111195794
trnav-aac_1 other upstream 3131402 29390540 ~ 29390612 (+) True trnav-aac_1
TU30023 other upstream 3533183 28988568 ~ 28988831 (+) True G22276
TU31098 other downstream 294620 32822344 ~ 32826939 (+) True G23086
XR_002651887.1 other downstream 309328 32837052 ~ 32841326 (+) False LOC103042732
TU31174 other downstream 548930 33076654 ~ 33081862 (+) False LOC103037425
TU31552 other downstream 1366651 33894375 ~ 33922851 (+) False cnksr3
TU31950 other downstream 2699125 35226849 ~ 35246299 (+) False trdn

Expression Profile