RNA id: TU31181


Basic Information

Item Value
RNA id TU31181
length 2213
lncRNA type sense_over
GC content 0.52
exon number 2
gene id LOC103036694
representative False

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 33083642 ~ 33169392 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

acaaaaaaaaaaaaaaaaaaaaaatagtgGACTGGTACTAACAACAATTCACAGCAATTAAAACCTCCAAAGCAGCGGGTGATGGCAGCAACGTAGTGGCCTGTCTGCACCTTGAAGTCAAACAGCAGACAGGCAGGTGGAGCAGCATGATGCAAAAactacaacagcagcagcaacaacaccaCCACTTACTAACCAAGAGGATTTGTAGCCAAAATGACAGTTATTTAACCTGTTAACTTTCATTTTTAtctgtaaataaactaattgtgCCTTGTAAATGGACCCAAATCCACTAAATTAGTTTTTAACACCAATAGTGAGCTTGTGCATTGTATCCTGCTGTTTGCTGAATGCCAACATGAATGCCTCTTTGTTTTATACTATGTGCCTTAATTGTACCCTCAGACTTGCTCAGGGGTGATTTGAAGCATGTGCCTTTTTGTATAAGTGACCCtggaggtttaaaaaaaatccctatTTGTACACACAGATGTACTTTTTGAAATGATCTTATTCTCTTTTTTAGCTGAAATTGCTTTCTTACAGCCAGCTGTAGCTCATTTGTGTTACATGAGGACCGGCCCTCTTCAAGCTGGATTAGTATTTCCAGGGGAAGTACTTGAAGTGCTGACCAAGGAGACCAtggattttaatccagtatgaatctgcacgGTGTGATTAGGCATTACAGTCTAAAAGGAAATATCTGTAGAGTGgtttaaatccagtatgaatctgcagtgtgtgcatAGGTGTTACAGTATAGATGAACTTCTGTAAAGAGGTTCTCCCAATAATATTAGTCCTGTTCCAGTCCACCTCATGCAAACATGTAAAACCTGTTAATACACGCTgcaatgtattatattataatgactGGAATAACGCAGACATGAACTTTTACACTCTTACACTGCACAGAGGCTTCTGGAAAAACTAATCCAGCCACAATAGGGTTTTACTTGATTTTTGACGATCTCAGTTAAATTAAGTTTTACCAGTGTCTCAGAGTAGAGGAAAAGTGCTGAGCTGTTAACTTCTACTCTCTATCAGTCTCTTCTAACTCACGTTTTTCCCTTCCCACACGTCTCTGctgtggttttagtttagtgGTTGTGGCATTACAGCACTGACAGACGTAACACAATGCTCGTTTTGCTCTTTTTGCTTTGTTGACTTTGAGTGTAATGTTACTCCCATGCTCAACTGGCCACAACCATATTTCCAAGCAGAGCCGCTTCCACGTGAGCCCCAACTGCATGTAGTCCCAATACCTGAGGAAGACTATGAGCTTTCACCCAACGAACGCCGCAAGAGATCGCTATCCAGAAGACAGTCAAGATGGATAAAATCCTAAACAACTATAAAAAAATCCTTTGCATATATGTAAAGTTGCTTTCACAAATGCCACTATGAAGATCTATGAACACTTGATATTACAGAGGtacatttttctcatttctgttttttggttctatattttttttaatgtttttttttttaaaccataaaaAAGTATGTGTGGATACAGCAGGGTAGGTTGCAAGTGACGAAATCCAGAGTTTTTGGCCAACTTGCTCTTTATCTGCTCCCCTCGTGTGCTTGTAAAATATCTGCTTCATTAAATACTTACAACATTAGAGTTATTAATGTGTCACTTATGCTAAATCTCAGCAGTGATGCTGGTAGTTACACGCTTGCCACAGGAAGGCCTTTACACTCACCCATGCTTTTAAATTTACATTCACGAAATGCTTTATTCATCACGGATCATAACGAGTGTCTTATACACACCCTCATATGCATCAGTCATTCATTTTATGAGCTTTCATCTCCTGAGAAATGTTCGTTTTTGTCATCATCTGCAGTATGGTAACACATGGCCTCCATTACTTTATCCTAAATCAAACATTTATCAGTTTCCTAGTATCAACTCACAGCTGATTTTACCAAAAGTGGAATTGCATGTCTGTGGTGTATATTTAGTACATTTGTcggttttcatttttttttccttttaaaatcaGAATATAGTTGttgtcattgttgttttatcagTATCAATCGCAGTTGGCATTTGTGTGCAAGACTATGGATATAGTATTGCTGCTTCATGTTTAAAACTGCAAATTGTGAATTCCACAgccttattttcttatttatttctgaaaCAGAGGAGGCATTTTTCAATAAAACTACTGAAAATATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU31132 lncRNA upstream 188992 32894241 ~ 32894650 (+) True G23116
TU31123 lncRNA upstream 242296 32837058 ~ 32841346 (+) True LOC103042732
TU31086 lncRNA upstream 367197 32711872 ~ 32716445 (+) True G23075
TU31072 lncRNA upstream 536178 32525062 ~ 32547464 (+) True G23062
TU31062 lncRNA upstream 555918 32522014 ~ 32527724 (+) True G23057
TU31326 lncRNA downstream 2977 33172369 ~ 33172714 (+) True G23251
TU31328 lncRNA downstream 20569 33189961 ~ 33190715 (+) True G23253
TU31330 lncRNA downstream 37920 33207312 ~ 33207532 (+) True G23255
TU31370 lncRNA downstream 176420 33345812 ~ 33346060 (+) True G23282
TU31374 lncRNA downstream 183608 33353000 ~ 33353261 (+) True G23286
XM_022684612.1 mRNA upstream 1793 33076624 ~ 33081849 (+) True LOC103037425
XM_007255453.3 mRNA upstream 7502 33070811 ~ 33076140 (+) True LOC103037759
XM_007255455.3 mRNA upstream 15915 33016420 ~ 33067727 (+) True filip1
XM_007255456.3 mRNA upstream 15915 33016421 ~ 33067727 (+) False filip1
XM_007255454.3 mRNA upstream 21101 33016421 ~ 33062541 (+) False filip1
XM_007255442.3 mRNA downstream 262531 33431923 ~ 33436804 (+) True naa20
XM_007255444.2 mRNA downstream 275010 33444402 ~ 33498321 (+) False cfap61
XM_007255445.3 mRNA downstream 275032 33444424 ~ 33498321 (+) False cfap61
XM_022684655.1 mRNA downstream 281253 33450645 ~ 33498321 (+) True cfap61
XM_007255446.3 mRNA downstream 338682 33508074 ~ 33511617 (+) True insm1
TU31174 other upstream 1780 33076654 ~ 33081862 (+) False LOC103037425
XR_002651887.1 other upstream 242316 32837052 ~ 32841326 (+) False LOC103042732
TU31098 other upstream 256703 32822344 ~ 32826939 (+) True G23086
TU30785 other upstream 1588744 31494345 ~ 31494898 (+) True G22834
XR_002651820.1 other upstream 2820749 30259308 ~ 30262893 (+) True LOC111195794
TU31552 other downstream 724983 33894375 ~ 33922851 (+) False cnksr3
TU31950 other downstream 2057457 35226849 ~ 35246299 (+) False trdn
TU31951 other downstream 2057457 35226849 ~ 35249655 (+) False trdn
TU32264 other downstream 3262816 36432208 ~ 36438970 (+) False ar
TU32543 other downstream 4469046 37638438 ~ 37654878 (+) True LOC111194342

Expression Profile