RNA id: TU31326


Basic Information

Item Value
RNA id TU31326
length 346
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G23251
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 33172369 ~ 33172714 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

caatcatcagctagtgcactctggatgaactgaattgatacaaaggagacttcgggacgaacagtgcggcctttctctctgtgcgtgcaaaGTTCTTCACCTACTAAAGCGGGAGGAGGACGCGCGCACATAGGGAGGGcggcactgtctaattactggaacaatatcacactgtctgactggacccagtcaattcttaaaacaataccacactgtccggctggatacagtcaaggccaaacactagtggtccggtcagacctgtgaaacttgaacactaacacgtgaaaatatgcatactaacatgagatgattttagcaacgcctcatcagcaggtttcacgtc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU31181 lncRNA upstream 2977 33083642 ~ 33169392 (+) False LOC103036694
TU31132 lncRNA upstream 277719 32894241 ~ 32894650 (+) True G23116
TU31123 lncRNA upstream 331023 32837058 ~ 32841346 (+) True LOC103042732
TU31086 lncRNA upstream 455924 32711872 ~ 32716445 (+) True G23075
TU31072 lncRNA upstream 624905 32525062 ~ 32547464 (+) True G23062
TU31328 lncRNA downstream 17247 33189961 ~ 33190715 (+) True G23253
TU31330 lncRNA downstream 34598 33207312 ~ 33207532 (+) True G23255
TU31370 lncRNA downstream 173098 33345812 ~ 33346060 (+) True G23282
TU31374 lncRNA downstream 180286 33353000 ~ 33353261 (+) True G23286
TU31377 lncRNA downstream 187666 33360380 ~ 33360599 (+) True G23289
XM_022684641.1 mRNA upstream 2977 33084440 ~ 33169392 (+) True LOC103036694
XM_022684615.1 mRNA upstream 2977 33084441 ~ 33169392 (+) False LOC103036694
XM_022684629.1 mRNA upstream 2977 33084441 ~ 33169392 (+) False LOC103036694
XM_022684633.1 mRNA upstream 2977 33084441 ~ 33169392 (+) False LOC103036694
XM_022684635.1 mRNA upstream 2977 33084441 ~ 33169392 (+) False LOC103036694
XM_007255442.3 mRNA downstream 259209 33431923 ~ 33436804 (+) True naa20
XM_007255444.2 mRNA downstream 271688 33444402 ~ 33498321 (+) False cfap61
XM_007255445.3 mRNA downstream 271710 33444424 ~ 33498321 (+) False cfap61
XM_022684655.1 mRNA downstream 277931 33450645 ~ 33498321 (+) True cfap61
XM_007255446.3 mRNA downstream 335360 33508074 ~ 33511617 (+) True insm1
TU31174 other upstream 90507 33076654 ~ 33081862 (+) False LOC103037425
XR_002651887.1 other upstream 331043 32837052 ~ 32841326 (+) False LOC103042732
TU31098 other upstream 345430 32822344 ~ 32826939 (+) True G23086
TU30785 other upstream 1677471 31494345 ~ 31494898 (+) True G22834
XR_002651821.1 other upstream 2909476 30259308 ~ 30262893 (+) False LOC111195794
TU31552 other downstream 721661 33894375 ~ 33922851 (+) False cnksr3
TU31950 other downstream 2054135 35226849 ~ 35246299 (+) False trdn
TU31951 other downstream 2054135 35226849 ~ 35249655 (+) False trdn
TU32264 other downstream 3259494 36432208 ~ 36438970 (+) False ar
TU32543 other downstream 4465724 37638438 ~ 37654878 (+) True LOC111194342

Expression Profile