RNA id: TU31328


Basic Information

Item Value
RNA id TU31328
length 755
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G23253
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 33189961 ~ 33190715 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

aaaaaagtggcctataatggaggtgggaggaataaagtcaagtttctgaaatgatccacttctactgcagtacagatttatactaacattactggctttcagtagactagacttacattacttaagtgtatttaaaactccagttcagtaacagcaatgtttagctcagttcaaatacagctagacagattatataatcttctgtatttagtaaaatatccagcataacagactctctatctgttaaaaactataaaacacaaagacagaggagaatgctgccctcagggttttctaacagaaacagtgagagttaggaaaaaagatggaaagtgcttcctttctgtgtgtttatatactaacccctcactcgtgctgaagttaaccttaatttacacgaaacgtggattaacacggctaacgtgcgttacccattagtttattagaatgtaaaaagcagtgaaagcatcttagctaatgatgacagattgcacagatcccttttacacctaaacatcgctaactttaaactggagacaagctaatctaactagcagcaaacagagcagcgtttacctgccttcagaaatctgaacaagctcacctctctaaatatcttggagacgcatgcctcatatttaaaaggtgagttttccagtgtagcgccgctgaatagtataaatgaagtttatccagtaaatgggagagaaggagccgctatgtgaggagttcagagtggaggggctcggggggtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU31326 lncRNA upstream 17247 33172369 ~ 33172714 (+) True G23251
TU31181 lncRNA upstream 20569 33083642 ~ 33169392 (+) False LOC103036694
TU31132 lncRNA upstream 295311 32894241 ~ 32894650 (+) True G23116
TU31123 lncRNA upstream 348615 32837058 ~ 32841346 (+) True LOC103042732
TU31086 lncRNA upstream 473516 32711872 ~ 32716445 (+) True G23075
TU31330 lncRNA downstream 16597 33207312 ~ 33207532 (+) True G23255
TU31370 lncRNA downstream 155097 33345812 ~ 33346060 (+) True G23282
TU31374 lncRNA downstream 162285 33353000 ~ 33353261 (+) True G23286
TU31377 lncRNA downstream 169665 33360380 ~ 33360599 (+) True G23289
XR_002651920.1 lncRNA downstream 310522 33501237 ~ 33502351 (+) True LOC111195982
XM_022684633.1 mRNA upstream 20569 33084441 ~ 33169392 (+) False LOC103036694
XM_007255442.3 mRNA downstream 241208 33431923 ~ 33436804 (+) True naa20
XM_007255444.2 mRNA downstream 253687 33444402 ~ 33498321 (+) False cfap61
XM_007255445.3 mRNA downstream 253709 33444424 ~ 33498321 (+) False cfap61
XM_022684655.1 mRNA downstream 259930 33450645 ~ 33498321 (+) True cfap61
XM_007255446.3 mRNA downstream 317359 33508074 ~ 33511617 (+) True insm1
TU31174 other upstream 108099 33076654 ~ 33081862 (+) False LOC103037425
XR_002651887.1 other upstream 348635 32837052 ~ 32841326 (+) False LOC103042732
TU31098 other upstream 363022 32822344 ~ 32826939 (+) True G23086
TU30785 other upstream 1695063 31494345 ~ 31494898 (+) True G22834
XR_002651821.1 other upstream 2927068 30259308 ~ 30262893 (+) False LOC111195794
TU31552 other downstream 703660 33894375 ~ 33922851 (+) False cnksr3
TU31950 other downstream 2036134 35226849 ~ 35246299 (+) False trdn
TU31951 other downstream 2036134 35226849 ~ 35249655 (+) False trdn
TU32264 other downstream 3241493 36432208 ~ 36438970 (+) False ar
TU32543 other downstream 4447723 37638438 ~ 37654878 (+) True LOC111194342

Expression Profile