RNA id: TU31901


Basic Information

Item Value
RNA id TU31901
length 1610
lncRNA type inter_gene
GC content 0.53
exon number 1
gene id G23719
representative False

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 34877293 ~ 34878980 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CCTTTCACCCAGGTCATTTTAATCCACAGCTCAACACAGTAAAGACAGATGTTACACTTCCTGTCTGCGAAAGTGGACTAACGTGACCAACTCTGAAGATAAAGTGCAGCAGCGCCCAGGATTAAGCATCGCAGGGTGTGGGGATATACAAACAATGTACATAACGTGTCTTTTCCCCCTGAAACACATTCATAAAAATACAAGCATTGTGGGGTGATCTTATACATGTACCACAGTACAAACTGAAGGTGCACAGTCAGTCTTTGGAAATTTACCAAAATGTGAAGCACTCATGCGACatgaagagaaaaacaaaatcattaatttaaaaatattcccTCTAACAAAATCCAAACCAATGTACAGCATATTTCAAGGCACCAAAGGATAGGGGCAGGGGGGAACAATAGGAAACACAATACAAATGAGAAATACATCAGTAATACCACCCTGATGATAGCCAGGGCCTTTGGCTCACACTGACAGCAGACAGAAACAGCAGGTGTTATATGAATGTTCATGGGCTACCACACTgacctttttcatttttaattttctaggTGAATGGTATTTTTTGACCTGAACTGCAGTGATAGTGTGGTTTGTATTAGAGGGACACTCCGACCAGAATGAAAAAGCCTGCTTGACTCCTGGTTTGATTGGTGCTGCAGTAGTCTCCTAAAACAAGACTACACAAAGTTTGGCACATTGGCAAACTGTGGTCTACAGACATTTACTTTGGCTCATTTAGAACATTCAAAACTTGATAAGCTCTTATTTTCCTTATCAAATCTGAAAATTTGgagcaaataaaatattttagaacagTTGGCTGGTGTAAAAACACCACATTTTCTATGGTAGACTTGGCGGCAATACCCTAACCAGGCAAGTCCTTGGATAAGACTCCTAGCAATACATTCTACAGTAAAATGTTCCAGCAGAACATGTTACATTATTATCCACAGTGACTTTGTATATTTGTGCATTTAAATAATCACTAGCTTATACATCTAAAAGCTCACTGCCCATCTTCCTTTGAGTCATTggtctttatttcttttctttttggccCTCAGCCCACCACAAATCTTTGGCCACCAAAAGTCAAGTTTAGGCATGTCtgctatagatttttttttttgtactgaaaaTGCATACTGAAGGTGAAACAATCTTTTATACAAGTAATTTTGGAATAgaaatatatctaaataaaaaaatgctgaattttTGAATAGAGGAAATGCGTAAAGCTCAAACCAGCATTTATTTAACCAGAACCAGACCAGCATAAACCAGCTGAAAACAGACCAGCATGCGTGTGTTTCTGGAGGAAGGGTAAACACTAGTCAGTGTCTGGTTTAAAATTTGTGAACATAATTAGACATAATCtctgttggatttttttttttaatctgctttGCTGGAAAAGTAAAAGCTGCGCTAATGCTATCTTGGTTGTGGCAAATGCATACAGGTCACAGGCTAGTCTAGCAGAATTGGTTAAGCTCTGTACAGATTCCCTATGGCTGTGATGTATTTGCATAATGCATGattgatatattatatagatctaTAGATAGAGAGCACATATGAATTAAAGCatg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002651946.1 lncRNA upstream 47021 34828836 ~ 34830350 (+) True LOC111196008
TU31849 lncRNA upstream 197574 34676018 ~ 34679797 (+) True G23683
TU31850 lncRNA upstream 210340 34663064 ~ 34667031 (+) True G23684
TU31638 lncRNA upstream 590476 34247837 ~ 34286895 (+) True G23499
TU31586 lncRNA upstream 829597 34046590 ~ 34047774 (+) True G23462
TU31911 lncRNA downstream 38321 34917301 ~ 34917569 (+) True G23727
TU31913 lncRNA downstream 41893 34920873 ~ 34968242 (+) True G23729
TU31935 lncRNA downstream 325826 35204806 ~ 35205035 (+) True G23748
TU31939 lncRNA downstream 388113 35267093 ~ 35302347 (+) False trdn
TU31952 lncRNA downstream 424992 35303972 ~ 35306133 (+) True G23753
XM_007255408.3 mRNA upstream 57051 34816867 ~ 34820320 (+) True hddc2
XM_007255412.3 mRNA upstream 201429 34670238 ~ 34675942 (+) True esco2
XM_007255415.3 mRNA upstream 251776 34597882 ~ 34625595 (+) True scara3
XM_007255420.3 mRNA upstream 306619 34552343 ~ 34570752 (+) False reps1
XM_022684966.1 mRNA downstream 347818 35226798 ~ 35302331 (+) True trdn
XM_022684931.1 mRNA downstream 347818 35226798 ~ 35302331 (+) False trdn
XM_022684935.1 mRNA downstream 347818 35226798 ~ 35302331 (+) False trdn
XM_022684955.1 mRNA downstream 347818 35226798 ~ 35302331 (+) False trdn
XM_022684958.1 mRNA downstream 347818 35226798 ~ 35302331 (+) False trdn
TU31552 other upstream 954520 33894375 ~ 33922851 (+) False cnksr3
TU31174 other upstream 1795509 33076654 ~ 33081862 (+) False LOC103037425
XR_002651887.1 other upstream 2036045 32837052 ~ 32841326 (+) False LOC103042732
TU31098 other upstream 2050432 32822344 ~ 32826939 (+) True G23086
TU30785 other upstream 3382473 31494345 ~ 31494898 (+) True G22834
TU31950 other downstream 347869 35226849 ~ 35246299 (+) False trdn
TU31951 other downstream 347869 35226849 ~ 35249655 (+) False trdn
TU32264 other downstream 1553228 36432208 ~ 36438970 (+) False ar
TU32543 other downstream 2759458 37638438 ~ 37654878 (+) True LOC111194342
TU32737 other downstream 3049375 37928355 ~ 37933989 (+) True G24345

Expression Profile