RNA id: TU31913



Basic Information


Item Value
RNA id TU31913
length 1631
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G23729
representative True

Chromosome Information


Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 34920873 ~ 34968242 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence


TCTATTCAAAAGTTGAAGTCAGCACTGAACCCAGTCATTACAGCCTGAATGGTCCCCTAGTACAGAGAACTCCAATCCAGTCTCCAGGAAACTTCAGCCAGTCCACGTTCTTTGttggtgttgttgttttttttgcttgaaaGAAAGACCCGATCTGGACACTCAGAAGCTCATCCTTATCACTTGTCCAGATGGCTGGAAATAGAACAAAACGAAATGTGGGCTGGCTGACGGTCCTTTTAATTGGAAGTCTAATATGCACTAGGAATacatctataataataaaacttctAGAATGTGTATTAGCTGTTAATAGAATATCACACACCTCATTTTGACCACTGAGCTAAAACAGAATCATGCCTTCTTCATAAACAATATTTACGAAGGCGTTCATCAAAATTTAGACTCGTTAAGCACGGGACAGGTTGTATATTTCACACAGTTATTTCTTTTCATTGTATTTACAACTCGGGATGGTAAACCTCAGCTCAGGAGAAACATGACGCAAGAAGATCCAATTTGCTTTTTCATCTGAAGGAGCTGTGTACTTGCATGATTGGAACACAGCCACCCACTCCGCATGTTGAAAACATGATATACTGGTACGGGGTAAAGACATGACTGGGTTCAGCCAGCGGAGTCACGACTCCGTCCTGCAACAGCATCGACACGTTAAGACTAATCAAGCACCATCTTCGAAACAGTGATGTATTTACACAAGTCTTGGAGAAGAGAAATGCGGTCAGGCTGACGTGAGAGTTTATGGGCTCGTGAACGCTTCCAACAACAAGGCTTTAACCCTCTATATCAAAGGCAGAACACTGACACAACGCTACGCGCTCTGAACTCTCTTAAAGACACTCATTCAAACCAGCAGCCGACATATTCATACTCCGTCTGGAGCACCAGGGGAAAGCTCTGCAGTCGTGAAAGATGACTGTGGGGAATTATTAGCCAATAAGGCCTGAAAAGTGGTGCTGCTACAATATCTTTATTAATCATCAAAGCTGCATAGAGCTTTGCCAGTGCAAATTCAGGAGGGGGATGATGAAATATGCCCATGCGAGTCTATTTACTAACTGGCAAACTGTGTGGAGGAGGGCAGGTTATTATTTATTGGAATGTTAACAGGATGTTGTTTCAGGCACTTTCCCTAAAGACCTTACACCCATATGGTGTTTATTTCTggcatgtatacatatatacagctctggaaaaaattaagagaccacttcagtttctgaatcagtttctttgcttttgctatttataagtatatgtttgagtaaaatgaacattgttgttttattcgatAAATTACGGAaaacatttctgccaaattctaaattaaaaatatggtcatttagagcagttatttgcagaaaatgacgcAGAGCAtttagacttcaaataatgcaaaggaaacaggaataaccctggtatttaatcacggtttccatgcatcttggcatgttctcctccaccagtcttacacactgcttttggataactttatgccactcctggtgcaaaaatccaagcagttcagtttggtttgatggcttgtgatcatccatcttcctcttaattatattccagaggttttcaatttggtaaaatcaaagaaa

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU31911 lncRNA upstream 3304 34917301 ~ 34917569 (+) True G23727
TU31901 lncRNA upstream 41893 34877371 ~ 34878980 (+) False G23719
TU31902 lncRNA upstream 41958 34877293 ~ 34878915 (+) True G23719
XR_002651946.1 lncRNA upstream 90523 34828836 ~ 34830350 (+) True LOC111196008
TU31849 lncRNA upstream 241076 34676018 ~ 34679797 (+) True G23683
TU31935 lncRNA downstream 236564 35204806 ~ 35205035 (+) True G23748
TU31939 lncRNA downstream 298851 35267093 ~ 35302347 (+) False trdn
TU31952 lncRNA downstream 335730 35303972 ~ 35306133 (+) True G23753
TU32021 lncRNA downstream 494892 35463134 ~ 35467716 (+) True G23817
TU32050 lncRNA downstream 559686 35527928 ~ 35528159 (+) True G23840
XM_007255408.3 mRNA upstream 100553 34816867 ~ 34820320 (+) True hddc2
XM_007255412.3 mRNA upstream 244931 34670238 ~ 34675942 (+) True esco2
XM_007255415.3 mRNA upstream 295278 34597882 ~ 34625595 (+) True scara3
XM_007255420.3 mRNA upstream 350121 34552343 ~ 34570752 (+) False reps1
XM_022684966.1 mRNA downstream 258556 35226798 ~ 35302331 (+) True trdn
XM_022684931.1 mRNA downstream 258556 35226798 ~ 35302331 (+) False trdn
XM_022684935.1 mRNA downstream 258556 35226798 ~ 35302331 (+) False trdn
XM_022684955.1 mRNA downstream 258556 35226798 ~ 35302331 (+) False trdn
XM_022684958.1 mRNA downstream 258556 35226798 ~ 35302331 (+) False trdn
TU31552 other upstream 998022 33894375 ~ 33922851 (+) False cnksr3
TU31174 other upstream 1839011 33076654 ~ 33081862 (+) False LOC103037425
XR_002651887.1 other upstream 2079547 32837052 ~ 32841326 (+) False LOC103042732
TU31098 other upstream 2093934 32822344 ~ 32826939 (+) True G23086
TU30785 other upstream 3425975 31494345 ~ 31494898 (+) True G22834
TU31950 other downstream 258607 35226849 ~ 35246299 (+) False trdn
TU31951 other downstream 258607 35226849 ~ 35249655 (+) False trdn
TU32264 other downstream 1463966 36432208 ~ 36438970 (+) False ar
TU32543 other downstream 2670196 37638438 ~ 37654878 (+) True LOC111194342
TU32737 other downstream 2960113 37928355 ~ 37933989 (+) True G24345

Expression Profile


TU31913 Expression in all Baseline Samples

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TU31913 Expression in each Bioproject

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TU31913 Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 80.
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