RNA id: TU32050


Basic Information

Item Value
RNA id TU32050
length 232
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G23840
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 35527928 ~ 35528159 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

taccagatcaggagaatctctcactatctttaataaactcctgaagacagagctcttcaaagagcacttactctcctaacacctctaacaaactaactaattctaacctcatctccttcttcctcttctctactcctctatcccattatttccctctgacctccttaaggccctatctatagatgttttatttttaacttctattatttttgtacttaacctcttctattat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32021 lncRNA upstream 60212 35463134 ~ 35467716 (+) True G23817
TU31952 lncRNA upstream 221795 35303972 ~ 35306133 (+) True G23753
TU31939 lncRNA upstream 225581 35267093 ~ 35302347 (+) False trdn
TU31935 lncRNA upstream 322893 35204806 ~ 35205035 (+) True G23748
TU31913 lncRNA upstream 559686 34920873 ~ 34968242 (+) True G23729
TU32052 lncRNA downstream 16173 35544332 ~ 35544557 (+) True G23842
TU32054 lncRNA downstream 31928 35560087 ~ 35560322 (+) True G23844
TU32074 lncRNA downstream 221789 35749948 ~ 35784823 (+) False G23860
TU32078 lncRNA downstream 235810 35763969 ~ 35770604 (+) True G23862
TU32071 lncRNA downstream 247620 35775779 ~ 35777626 (+) False G23860
XM_007255393.3 mRNA upstream 67589 35448642 ~ 35460339 (+) True serinc1
XM_022684942.1 mRNA upstream 225597 35226798 ~ 35302331 (+) False trdn
XM_022684991.1 mRNA downstream 110188 35638347 ~ 35676321 (+) True gab3
XM_007256415.3 mRNA downstream 279308 35807467 ~ 35810107 (+) True LOC103040467
XM_007256402.2 mRNA downstream 295037 35823196 ~ 35850191 (+) True zc3h12b
XM_007256403.2 mRNA downstream 295037 35823196 ~ 35850191 (+) False zc3h12b
XM_007256406.3 mRNA downstream 349034 35877193 ~ 35923957 (+) True msn
TU31951 other upstream 278273 35226849 ~ 35249655 (+) False trdn
TU31950 other upstream 281629 35226849 ~ 35246299 (+) False trdn
TU31552 other upstream 1605077 33894375 ~ 33922851 (+) False cnksr3
TU31174 other upstream 2446066 33076654 ~ 33081862 (+) False LOC103037425
XR_002651887.1 other upstream 2686602 32837052 ~ 32841326 (+) False LOC103042732
TU32264 other downstream 904049 36432208 ~ 36438970 (+) False ar
TU32543 other downstream 2110279 37638438 ~ 37654878 (+) True LOC111194342
TU32737 other downstream 2400196 37928355 ~ 37933989 (+) True G24345
TU32794 other downstream 2564815 38092974 ~ 38098324 (+) True G24390
TU32857 other downstream 2704434 38232593 ~ 38237041 (+) False G24431

Expression Profile