RNA id: TU32054


Basic Information

Item Value
RNA id TU32054
length 236
lncRNA type inter_gene
GC content 0.32
exon number 1
gene id G23844
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 35560087 ~ 35560322 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tgcacatcaactggtgttcgctgtctattgtgttcaactgcactacctccattttacatcacacacacacactaaagactgtacttttataatttcattttattttttattttgttgtatttatatgtatcatttatattttttttatctttttgtaactttgtgtactatacacacctgctgctggatgtcaagaatttcccctcggggatcaataaagtatctatctatctatc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32052 lncRNA upstream 15530 35544332 ~ 35544557 (+) True G23842
TU32050 lncRNA upstream 31928 35527928 ~ 35528159 (+) True G23840
TU32021 lncRNA upstream 92371 35463134 ~ 35467716 (+) True G23817
TU31952 lncRNA upstream 253954 35303972 ~ 35306133 (+) True G23753
TU31939 lncRNA upstream 257740 35267093 ~ 35302347 (+) False trdn
TU32074 lncRNA downstream 189626 35749948 ~ 35784823 (+) False G23860
TU32078 lncRNA downstream 203647 35763969 ~ 35770604 (+) True G23862
TU32071 lncRNA downstream 215457 35775779 ~ 35777626 (+) False G23860
TU32072 lncRNA downstream 221549 35781871 ~ 35787149 (+) True G23860
TU32073 lncRNA downstream 226430 35786752 ~ 35797617 (+) False G23860
XM_007255393.3 mRNA upstream 99748 35448642 ~ 35460339 (+) True serinc1
XM_022684942.1 mRNA upstream 257756 35226798 ~ 35302331 (+) False trdn
XM_022684991.1 mRNA downstream 78025 35638347 ~ 35676321 (+) True gab3
XM_007256415.3 mRNA downstream 247145 35807467 ~ 35810107 (+) True LOC103040467
XM_007256402.2 mRNA downstream 262874 35823196 ~ 35850191 (+) True zc3h12b
XM_007256403.2 mRNA downstream 262874 35823196 ~ 35850191 (+) False zc3h12b
XM_007256406.3 mRNA downstream 316871 35877193 ~ 35923957 (+) True msn
TU31951 other upstream 310432 35226849 ~ 35249655 (+) False trdn
TU31950 other upstream 313788 35226849 ~ 35246299 (+) False trdn
TU31552 other upstream 1637236 33894375 ~ 33922851 (+) False cnksr3
TU31174 other upstream 2478225 33076654 ~ 33081862 (+) False LOC103037425
XR_002651887.1 other upstream 2718761 32837052 ~ 32841326 (+) False LOC103042732
TU32264 other downstream 871886 36432208 ~ 36438970 (+) False ar
TU32543 other downstream 2078116 37638438 ~ 37654878 (+) True LOC111194342
TU32737 other downstream 2368033 37928355 ~ 37933989 (+) True G24345
TU32794 other downstream 2532652 38092974 ~ 38098324 (+) True G24390
TU32857 other downstream 2672271 38232593 ~ 38237041 (+) False G24431

Expression Profile