RNA id: TU32078


Basic Information

Item Value
RNA id TU32078
length 6585
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G23862
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 35763969 ~ 35770604 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GGAAAAATGCACCACACAACAGAAATGACTGACATTAGCTTTGTTAGGTTTGAGATGGGAGTTTATTTCCAGTTGAGAAGTGTGCAAGTtgattgttctgtgtttttgagtgtatCAAAAGCACTGGGAGTGTCCAGTACTGTCTGAGGGGCAGTATTAGTAAGGAAAGTGGTCTGGCTGGCAGGGGATAAATCCTGCTCTTTGTGTCAAAACATTCATTGTCTGTGTATATACATCCATATGTataaaaaagcaatattttCTTGTGATGATTTGTGCCAGCATATACACGCCAGCAAAGACAGCGTGAACATTCAATCACTGATCACAAAAAGGACTGTACCAAATgccaatacaaaataaaaacactacaaacaattaaaaactcATCACAAGCTCATAAACAGCATTGATTTAGTCAGAGAAAATGTGTTgattgtggggggGGATGTTTCCTTTGGCGCAGTTTGGGAAACCTACACCATCCAGTAggattaagattattaaaacattCTCTTACTGGTAAGCTCTCTTACTGACCTAAACACTTAAAGGTGCCACAAAACgcatttatttagtattatattgttattgtaatattgttcTATAATGGCTAAATACTTATATCACTCGTGTAATTTAATTagctctgctctgattggctggtttaCAGCGAGGCACTGTGATGATAGCTTACACAGAACAGCCACAGCACAAGTTTGTTCAAGCACTGTACTAAGAACCCTGTAATTACAGCATGTTTTCTAACGAGTCCTGTCCACACAAGACGTACAGGATATTGCTGTTCTCTGAGAAGGTAGTCCATCTAGCTAAAGGGCCTCATCTGAAATCATGCTAGGCTAGAGTTAGCTTTTAGCATAGCATGGATTGAACTCTATCAACCAAAGCAGGATTATTAGGTCCGTAATACCCTTAGCAACCCATAGTTGTCAGTCTTCAGTCTTAAGGTGATATGCACGGTCACCAGTATTACTGACACACAGGCGGTATGATTGTCTCAGAAAACTGACCACACAAGCACCTTATTCTCAGGAAGTGGCCACTGCATCAACGCTGGTGTGTGTAAAGATTAATTGGTCAagaatattatgtaaaagttttcTTTCTTAACTATGCCAAAGCAAATGGCGTTTTACATTCTATGGCACCTTTACAAAAAGGGaatttcattcttttttaaaattcttcTGCATAATAAAACAGTTGAGATACAAAGAACGTTGGATAGagtggtttggtgtgaaacATTCAAGAGAAACATGCACAGAAAGAATTATTTATCAAGAAAATCTGTGTAAACTCCCAATATTTTTTCAGTGGCTGGAGGCCAACACTGTACGTAACCCCGCACTTTAGTTAATCTTCAAAATCTCTGTTTTTCAGCTACAATTCGAGATACTAGCTGTACAAGGCTAGCATGGTAACATTAGCTTAGGTTACACagctttagcatttgtttgtttatcaaaCATCTGGCTGCCTTGTTCTGTGTAAAATTTAACCCAGGTTCTGTTACAATatagctttaaattaaaaggCTTTATGTTGCATTGTGATTGTTCGCTTATCATTagtttgtttaattaacatttctcCTGCATCACTTGTTTCATAGTGAGTTTAATCATTGCAATTTCATGGTTCTTTCTTAAAACTGAAGGAGTACCAGGCCACAGCATTAGTGGTAACAGTGGAACCATTGACAAATTTAAAAGCTCTTAAAAGCTCCCTCGCAGAAAGTAATTACACCaaatgttgaaaaatgcacTGCCTGAAGGCAGACACTATTTTACCAGATTTTAGAGAAATTATTGGTCTAAACCATAATTTTGAAAAAGGGGTAAACATAGGGTGTATGTCAAAGATACATTTAGGTTCACATATGGTTTAGCTTAATACATAATATGGCTATATTTGTGTTGTAGAAATGGTAACAACTAGTTAGCAAGTGGATCATCATTACTGTCAAAACGTTTCATTATAGTGAacaatttcacaccaaaccccaCTCTGAATTTTATCCATTTCAAATATTGAATTATACAGGGAAGTTTGAAATTTGCAGAATTTTCCTTTAACAAAATGTTGAAATCTATTCTTTGcagtgttttctggaatgaCTAGACGcaaagctaacctagctagtttaTCCTGCCTTTTTATACTGTAGAAGCTTTAAAGCTATTATCTAAAGCTGCCCAAAATAGCTTTTAACACTTAATGGAACAATGtgatgtgtttgtttattttaggggTGTCCAGTCTTCTCCGTACTGGTACGGTGTAGCTGCAGGTTTTCAATCTAAACAACCAGCGGCACAAATGATTCCAATTGTTTGATCAGTTTTCAGTCTGCAAACAACTGTTCAGATGTGCTTTTGCTTGGCgagaatgaaaacctgcaggcACACTTAGGTTAAACTGGACATCCCACACTTAGTATACAATGTTATAATACCTTCACTAGCAAGCCAATGTCTTTTCTTTagtacagaaaagaaaaattgaTAAATGGGTGAGTGTGTTTTGCTCTTGTGCTACGTTCTCGGCCGAACTATTACAGGCCTCGTGTTAGCTGGCGTAATCACTAACCAGGAAACTAAAGGTGTGTATCATTTTTCTCCTTTAGAAACATTAAGAGCATTTTAAAGACCCCTAGTATCTTATCCTGTGGTAAACAACCAACATTTCAAACACACTTATGGTTTCTTGTGGACATTTCTGAACATGGCTGTGTACCCCCACGTTTCGCTGAGCGTGCTCACTAGAATTTCCTtactaatgtaatgtagtgaagTGAAGAAATGTGTAAACTAAAAcgttaattttaaaataaactatttgaaaatgtaaacataaaaacagcGTAACAGCATATTTTAAAAGGGAATATAAATCCCAACGAATCCCATCAAAACCCAACTCACATTCACTGTCCATTTGCTCTTAAAGAAAAATGCCTGTTACTTCAAATCACTGCCACATGAAATGAACCTCCAACAGAGATGGAAACTTAAAtatacaaacactgtctctctctgttctgttaGCATACAGGCTATACTGAAAATAACAATTGTCAAATGGATACGTATAATCAAGTCAAACAAACgttcagaacaaaaaaaacagaaaaaaagctcTATATCTGGTCAACAATGATCATAAACACAACTGCTACATGTATGCAAAACAACatgtctaataataaaaaacacaatggcttctaaactgaaaaataaaaacaatggtGGAAAAGAAAATCAACATCTAcacattttctaaaatatattagCTTATCTGTAGAGAACAGCAAAACTGTGTGGGAGGACAGACGTGTATACAAATCAAGAATGGTCAGTAAACATCCAGCTGTGTCTTTGGTGATGAgatctacatctttttttttttttttttttgaatgaagaagaaaaaagacaaaaaatatgatTGTTCACATGGTACGTTTAGGGGTTGCTGTGGAGAACCCCCCTTCCAGTTCTGCCCTCCGACTCTTGGCTGGGATTTCTCTTGGGTTCTCGGACTGGTCAGAACGAAGATGGGGTATACCCTGGGTGATTCCAACTGGTCGACTCTTCCACTGCGTTGCTGATGGTGGATTACTGTAAGGGTACAGGGCATCGCCTCCACCGGCCATTACGTCTCCTTCAGCAGCTACTCTGCCAGTACTCGATGAGCTGCCACTGTGACAGGAGGCCTGTAGGGGGAGGTGTGAGGGTCTGACTGTTGATTGACGGTTAGAAGAACAGCTTGACATTGTTTCCATCCAATGACTGCCTTGGGAGAACTTTTGCTGCTGCTGTGAAGAAAGACTTGCTTTCTGGGAGGATTCAAATACACAAGCACGCCCCTGCCTCCAACCATCTCCATGATCCCTTGCTGGATGCCGTGGTAGCGCCATGTCACAACAGCCCCCTGTTTCCGGGTTATTTTTCTTGTGGTGGAAAAAGGGAGCCATCTTTTGACCATGTGATGCTACTGATGCGTAAAGCTCGCTGGTGTGGAACTCCAAACTATCTGTATCCAGAGAGCGGCTACGGCGGTTAAGTGCTAGCGGAGCGGGAATGGGAGGGCATGGCCGGCCCAGGCTAAGGTGCCGAGGAAGGCTTGTGATGCCCCAAGCATTGCTGAACAACAAGCTCTGCTCATAGGCATCAAAGGTTCTTTGATCACACTCAGCAAAGGCATCCTGCTGCAGGTAGCAGCCGTCATCCTCAAACGGCTCATAAGGGGAAGTTAACTCCTCCTCTGCCTCAACAAGCTCTGTTTGCTGTTCGCATTCACCCTCGTTTTCCATATCAACCACATCAAACGTAACAATGGCAGGAAGAGCACTCAGGCTTGGCCCAAAAGGTGAGCTGGATTCTGAACCATCTAAGCTCTCTGTAGAGTTGCGGTACAGTCGAGTGTTTTTGGTGAAATCTACCAAGGCTTGTGAGAAACAGACCATGAGCTCCTCTTGGGACTGGCTGCGGCCTCCGCTCGGTGGTAAGGAGCTGCCATTCGATGCTTCGCAGCGTTCTTGCTCAGGATACAGGACCATGTCTTGAGGAGGACTAGGTGTCTTTGAGACTTGCGGGCTACACCTTGAATCAGCTTTAGGTCTGTATAAAGGTTTGTGCGTGAGCTGAGACCCGCTGTGAGACAAAGCCTCCTTTATGACTTGGCCTCCTTGCGCTGATCTGGCACCATGCTGATGGAGCCCTTCCTCAGCTGAGCTTTTGCAGGTATCCTCAATATTTGACTCACTATAAAAGCAATCCCCACTATACAGATCTTTGGATGGACTTCTCAGGTTCTGCAACTCACAGCACAGCAAGGCATGCTGTATCTTACTGAGTCGTTCCTCCTCGGTCTCCATTGCGCCAGTTTCCAGTGCATACAGCAGGTCTCCTTTACCTTTGCTGCCCTGCAAGGGAGCTCCCAAGAATCCGTGACTGTCTTTCGAGGGAAGAGGTGGACTAAGCAATCGGTCATCTGGCTCAAAAAGTTCATAAAGGGCATCGCCACTATAGCTGTCCCGTGGAAGCCTTTCTTGCCGCGGACGTTCCCTTGTTTCCTCATCAGCTCCCGGTGTGGTGGAATCGTAGTACCCCTCGTCACTGTTAGGAACAGACTCTTGACGGTCACTCTGTGGGGTTAGAAGGTCAGTAGGAGTAAGGGCTGTTTCTGTGCCCCCCAAAAAGCTAGTGCTGGTGTTGCCACTGCTGCTTGTAGTGGCAGTATGAAatgtgctgattggctgatcaggtGTGATTGACAAGCTGTCAGTCTGCTCTGATGGTAGGTAGCAGACCTCGTTGCCAGTATCTGACTCCCAAAGACTATGTAGATAATCACTGTCCACTTCATCTGGAGTTGCCATCTCCTCTCCGCCTCCCTGATAAGTAATAAGGCAAGAGCTGCGTTTGCCAGCATTGCGACTTCCCCTCTCCCCTGAAACTGAACTCTCAGCAACACTGACATCATCCTGGTCTGCAATTATGTCCCCACAACCAGTAAGAGAGTCAAAGCTCTTCAAAGAAGACACATCGCCAAAGATCATATTCACATTGTCAGAGGAGGCAGACATTGTAGGTAACTCGCCCTCAGGCACGTCAGCATTTAGCTCAGCCAGGCGAGCCATCTCAGAGTCAGCAGATAACGGCTGGCGATATGTAGACAATCTggcctttctctttctttcctcttcctcctccttatCATCATCTTTTCTTTCATCTCTCCTCGTGTCTCCTTCCTCTGCCTCACCCACCTTCCCCTTGCTCCGTCGTTTCTCAGGCACTAGAGTTTCGTCCTTTGTACATTCGTCGGCTGCAGAAGCAGACGGCTTTTCAGAATTGCTGCCATTATCTGCAATAGGCACAACTGGTTCCAAGACCTTGCCCAGACGACCATCACCAGCATCGCTGAGACGGCCAGCATTCTGCTGAGTAGCAGGCACTGTTTCACCCAATGACATTTCAAACATCTCATTTTTATCCAGTTcaacatgtttgttttttcgGTGTCTTCTAATGCTGCTAAACAGACCTCTAAGGCCTCTTCTTTGTCGTGGGAGGGACTGCGACTTTGCAAGACCTTCACGCATTTTTTGTGACTCACTCGAGCCATTCGGGTTGTGGAACTCAAAGTCTGCCGAAGTTATATCACCACTCCCCCTGATGCTTTCTTCCCAGCATCCTCTGCTCACGCCATCATACGTCTGGCTCTTGGTTACACCTGTTTTGGATGAGCCCCTTCCTTGTCCTTTTCCCCGTCCTCCAAAGAAGCTTGGGAGCATACAGATGCTCTTACGACCTCCAAAAAACCTAAATGCAGTCTTCTTTAGCTTCCCCGTTGGTGATGTCTGGGACTGCTGAGGATCAGGGGATACGGAGTCTGATGGTGGCCCACCGGCCGCACCAACCACCTCACTTCCCGCTAAGGTCTCCATGACAACTCAGGAAATCACTGCTAGAGTGGTGTACTCATGACAAGGTACACTCTGTTCCAGGTCCAAATGCAAGGTTGCTGTGAAAGAGTGCACTAAACACACTCTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32054 lncRNA upstream 203647 35560087 ~ 35560322 (+) True G23844
TU32052 lncRNA upstream 219412 35544332 ~ 35544557 (+) True G23842
TU32050 lncRNA upstream 235810 35527928 ~ 35528159 (+) True G23840
TU32021 lncRNA upstream 296253 35463134 ~ 35467716 (+) True G23817
TU31952 lncRNA upstream 457836 35303972 ~ 35306133 (+) True G23753
TU32071 lncRNA downstream 5175 35775779 ~ 35777626 (+) False G23860
TU32072 lncRNA downstream 11267 35781871 ~ 35787149 (+) True G23860
TU32073 lncRNA downstream 16148 35786752 ~ 35797617 (+) False G23860
TU32082 lncRNA downstream 27108 35797712 ~ 35798076 (+) True G23866
TU32085 lncRNA downstream 50696 35821300 ~ 35821831 (+) True G23869
XM_022684991.1 mRNA upstream 87648 35638347 ~ 35676321 (+) True gab3
XM_007255393.3 mRNA upstream 303630 35448642 ~ 35460339 (+) True serinc1
XM_022684973.1 mRNA upstream 461638 35226798 ~ 35302331 (+) False trdn
XM_007256415.3 mRNA downstream 36863 35807467 ~ 35810107 (+) True LOC103040467
XM_007256402.2 mRNA downstream 52592 35823196 ~ 35850191 (+) True zc3h12b
XM_007256403.2 mRNA downstream 52592 35823196 ~ 35850191 (+) False zc3h12b
XM_007256406.3 mRNA downstream 106589 35877193 ~ 35923957 (+) True msn
XM_007256407.3 mRNA downstream 171491 35942095 ~ 35964597 (+) True LOC103037324
TU31951 other upstream 514314 35226849 ~ 35249655 (+) False trdn
TU31950 other upstream 517670 35226849 ~ 35246299 (+) False trdn
TU31552 other upstream 1841118 33894375 ~ 33922851 (+) False cnksr3
TU31174 other upstream 2682107 33076654 ~ 33081862 (+) False LOC103037425
XR_002651887.1 other upstream 2922643 32837052 ~ 32841326 (+) False LOC103042732
TU32264 other downstream 661604 36432208 ~ 36438970 (+) False ar
TU32543 other downstream 1867834 37638438 ~ 37654878 (+) True LOC111194342
TU32737 other downstream 2157751 37928355 ~ 37933989 (+) True G24345
TU32794 other downstream 2322370 38092974 ~ 38098324 (+) True G24390
TU32857 other downstream 2461989 38232593 ~ 38237041 (+) False G24431

Expression Profile