RNA id: TU32286


Basic Information

Item Value
RNA id TU32286
length 407
lncRNA type inter_gene
GC content 0.31
exon number 1
gene id G24030
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 36468111 ~ 36468517 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

caattgcaagttgttctcctattggaatctcctctgaagagtggcatcatgggcagtcaaggacaatccacagaccacctccaaagagctgcagcatctctgcagcgactctgtttgtggcgtgcttgcagaaatggcttctttttcatcactctcccatacagcttctccttgtgcaaagtgcgctgtattgttgaccgatgcacagtgacaccatctgcagcaagatgatgctgcagctctttggaggtggtctgtggattgtccttgactgttctcaccattcttcttctctgcctttctgatatttttcttcgCCTGCCatttctgggcttaacaagaactgtccctgtggtcttccatttccttactcttcagaggagattcaaataggagaacatcTTGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32285 lncRNA upstream 299 36466561 ~ 36467812 (+) True G24029
TU32260 lncRNA upstream 4492 36459175 ~ 36463619 (+) True G24011
TU32278 lncRNA upstream 131645 36332439 ~ 36336466 (+) True G24023
TU32274 lncRNA upstream 138242 36328588 ~ 36329869 (+) True G24022
TU32275 lncRNA upstream 138242 36328588 ~ 36329869 (+) False G24022
TU32287 lncRNA downstream 96 36468613 ~ 36471782 (+) True G24031
TU32290 lncRNA downstream 96 36468613 ~ 36471585 (+) False G24031
TU32295 lncRNA downstream 785 36469302 ~ 36471585 (+) False G24031
TU32263 lncRNA downstream 15329 36483846 ~ 36486600 (+) True G24012
TU32298 lncRNA downstream 45323 36513840 ~ 36515743 (+) True G24034
XM_022685081.1 mRNA upstream 9182 36249824 ~ 36458929 (+) True ar
XM_022685055.1 mRNA upstream 371385 36043431 ~ 36096726 (+) True LOC103040783
XM_007256407.3 mRNA upstream 503514 35942095 ~ 35964597 (+) True LOC103037324
XM_007256406.3 mRNA upstream 544154 35877193 ~ 35923957 (+) True msn
XM_007256403.2 mRNA upstream 617920 35823196 ~ 35850191 (+) False zc3h12b
XM_007256410.3 mRNA downstream 142746 36611263 ~ 36619989 (+) True yipf6
XM_022667758.1 mRNA downstream 158251 36626768 ~ 36628605 (+) True LOC111191796
XM_022685092.1 mRNA downstream 204454 36672971 ~ 36796896 (+) False stard8
XM_022685101.1 mRNA downstream 226009 36694526 ~ 36796896 (+) True stard8
XM_022685124.1 mRNA downstream 514665 36983182 ~ 37003775 (+) True c3hxorf56
TU32264 other upstream 29141 36432208 ~ 36438970 (+) False ar
TU31951 other upstream 1218456 35226849 ~ 35249655 (+) False trdn
TU31950 other upstream 1221812 35226849 ~ 35246299 (+) False trdn
TU31552 other upstream 2545260 33894375 ~ 33922851 (+) False cnksr3
TU31174 other upstream 3386249 33076654 ~ 33081862 (+) False LOC103037425
TU32543 other downstream 1169921 37638438 ~ 37654878 (+) True LOC111194342
TU32737 other downstream 1459838 37928355 ~ 37933989 (+) True G24345
TU32794 other downstream 1624457 38092974 ~ 38098324 (+) True G24390
TU32857 other downstream 1764076 38232593 ~ 38237041 (+) False G24431
TU32915 other downstream 1890818 38359335 ~ 38382310 (+) True G24463

Expression Profile