RNA id: TU32434


Basic Information

Item Value
RNA id TU32434
length 545
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G24144
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 37010970 ~ 37013258 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

accagcacctgtatttgTAAAGAACatctagtaAAGAACTGGCATATAAGTGGAAATATACTGTGTTTATCCTGTATAATTCTTCAATTAAATGtacacaaatcaaacaaaatattaacattttagctCCCCTGATCATATAGGATCCGGCCAGCAtcctgtgaccactgatgaaacagagaatgaccaacacaaactgtgcagcaacagattacAGAGCTTCTGTTTCTGACTTTAAATCTACAAGGTGGAGAAGCTAGGTCTGTCTTaaagagtggaggacagtgagtgaacacagtgtttaaaaactccagcagcactgctctccaaaccatcactgatcatcagtaaattttacattttatttggaaatcaagtaagcagagtctggaggaagagtggagagacgcagttcaagctgcttgaggcctagtgtgaagtttctacaatcagtgatggttttcgAGAGTCATGTATCTGctattatcaacaataaaataaataaatgcttaaaaatagattactttgtgtgtaataaatacatc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32339 lncRNA upstream 115670 36890577 ~ 36895300 (+) True G24069
TU32316 lncRNA upstream 208725 36800897 ~ 36802245 (+) True G24047
TU32315 lncRNA upstream 210450 36799918 ~ 36800520 (+) True G24046
TU32310 lncRNA upstream 387708 36622118 ~ 36623262 (+) True G24041
XR_002649666.1 lncRNA upstream 404716 36605539 ~ 36606254 (+) True LOC111191795
TU32451 lncRNA downstream 138181 37151439 ~ 37151671 (+) True G24160
TU32455 lncRNA downstream 202828 37216086 ~ 37216521 (+) True G24164
TU32459 lncRNA downstream 218532 37231790 ~ 37313329 (+) True G24168
TU32461 lncRNA downstream 246550 37259808 ~ 37269100 (+) True LOC111196047
XR_002651990.1 lncRNA downstream 246554 37259812 ~ 37261621 (+) False LOC111196047
XM_022685124.1 mRNA upstream 7195 36983182 ~ 37003775 (+) True c3hxorf56
XM_022685092.1 mRNA upstream 214074 36672971 ~ 36796896 (+) False stard8
XM_022685101.1 mRNA upstream 214074 36694526 ~ 36796896 (+) True stard8
XM_022667758.1 mRNA upstream 382365 36626768 ~ 36628605 (+) True LOC111191796
XM_007256410.3 mRNA upstream 390981 36611263 ~ 36619989 (+) True yipf6
XM_022667349.1 mRNA downstream 424825 37438083 ~ 37490233 (+) True eda
XM_007235852.3 mRNA downstream 484631 37497889 ~ 37503953 (+) True LOC103022398
XM_007235849.3 mRNA downstream 497676 37510934 ~ 37517867 (+) True igbp1
XM_022667422.1 mRNA downstream 620523 37633781 ~ 37637618 (+) False LOC103021778
XM_022667417.1 mRNA downstream 623078 37636336 ~ 37637628 (+) True LOC103021778
TU32264 other upstream 572000 36432208 ~ 36438970 (+) False ar
TU31951 other upstream 1761315 35226849 ~ 35249655 (+) False trdn
TU31950 other upstream 1764671 35226849 ~ 35246299 (+) False trdn
TU31552 other upstream 3088119 33894375 ~ 33922851 (+) False cnksr3
TU31174 other upstream 3929108 33076654 ~ 33081862 (+) False LOC103037425
TU32543 other downstream 625180 37638438 ~ 37654878 (+) True LOC111194342
TU32737 other downstream 915097 37928355 ~ 37933989 (+) True G24345
TU32794 other downstream 1079716 38092974 ~ 38098324 (+) True G24390
TU32857 other downstream 1219335 38232593 ~ 38237041 (+) False G24431
TU32915 other downstream 1346077 38359335 ~ 38382310 (+) True G24463

Expression Profile