RNA id: TU32527


Basic Information

Item Value
RNA id TU32527
length 380
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G24219
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 37551538 ~ 37552253 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

cctttcTATTAGCTGTTTTCCCAGAACGATCTTGGTTCCCTCCACTTTAATGAGCTCCTCATTATCATTATGAATGACAGTCTTCTCCagttcctcctcctgctcctctgtCATGGCAACAGGGTTAGAGGGCGGGGCATTGGTCTGATAGTACAGTGGGCAGAACTTATTCGTCCTCATGTGACCAATCGCGCCACATGCTCCACACTTcagCTTTAGATCGGGCCTCTCTTTAGCCTTTTTGGGACGTTTTTCTGGCGGACAGCGGAACTTGTCCTTCTCCTGGTTGCGTTTGAGTCTGCGGAGCTGCTCCTGAATCCTTCGCCGCTCTTTCCTCATCTCTTCCCTGTGCTGCTCATCAAACAGAGCAAACTTCcgac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32487 lncRNA upstream 59260 37487138 ~ 37492278 (+) True G24188
TU32459 lncRNA upstream 238209 37231790 ~ 37313329 (+) True G24168
TU32461 lncRNA upstream 282438 37259808 ~ 37269100 (+) True LOC111196047
XR_002651990.1 lncRNA upstream 289917 37259812 ~ 37261621 (+) False LOC111196047
TU32455 lncRNA upstream 335017 37216086 ~ 37216521 (+) True G24164
TU32548 lncRNA downstream 19001 37571254 ~ 37576892 (+) True G24228
TU32551 lncRNA downstream 29867 37582120 ~ 37585290 (+) True G24231
TU32540 lncRNA downstream 36853 37589106 ~ 37714382 (+) False LOC111194342
TU32558 lncRNA downstream 59918 37612171 ~ 37612601 (+) True G24237
XR_002649623.1 lncRNA downstream 64525 37616778 ~ 37620270 (+) True LOC111191733
XM_007235849.3 mRNA upstream 33671 37510934 ~ 37517867 (+) True igbp1
XM_007235852.3 mRNA upstream 47585 37497889 ~ 37503953 (+) True LOC103022398
XM_022667349.1 mRNA upstream 61305 37438083 ~ 37490233 (+) True eda
XM_022685124.1 mRNA upstream 547763 36983182 ~ 37003775 (+) True c3hxorf56
XM_022685092.1 mRNA upstream 754642 36672971 ~ 36796896 (+) False stard8
XM_022667422.1 mRNA downstream 81528 37633781 ~ 37637618 (+) False LOC103021778
XM_022667417.1 mRNA downstream 84083 37636336 ~ 37637628 (+) True LOC103021778
XM_022678185.1 mRNA downstream 85577 37637830 ~ 37644050 (+) False LOC111194342
XM_007239970.3 mRNA downstream 416981 37969234 ~ 37975259 (+) False LOC103046026
XM_007239969.3 mRNA downstream 419385 37971638 ~ 37975259 (+) True LOC103046026
TU32264 other upstream 1112568 36432208 ~ 36438970 (+) False ar
TU31951 other upstream 2301883 35226849 ~ 35249655 (+) False trdn
TU31950 other upstream 2305239 35226849 ~ 35246299 (+) False trdn
TU31552 other upstream 3628687 33894375 ~ 33922851 (+) False cnksr3
TU31174 other upstream 4469676 33076654 ~ 33081862 (+) False LOC103037425
TU32543 other downstream 86185 37638438 ~ 37654878 (+) True LOC111194342
TU32737 other downstream 376102 37928355 ~ 37933989 (+) True G24345
TU32794 other downstream 540721 38092974 ~ 38098324 (+) True G24390
TU32857 other downstream 680340 38232593 ~ 38237041 (+) False G24431
TU32915 other downstream 807082 38359335 ~ 38382310 (+) True G24463

Expression Profile