RNA id: XM_022678185.1


Basic Information

Item Value
RNA id XM_022678185.1
length 3105
RNA type mRNA
GC content 0.52
exon number 6
gene id LOC111194342
representative False

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 37589106 ~ 37714382 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATGGCTGCACTATGTATTCTGCACCCGTTTGGTGCATTGGTTGATCACCTGCAGCAGAGACACCTGTGGCAAAGCCACCTGCAGCAGAAACCCCTGTGGCAAAGCACCTGCAGTAGAAACACCTGTGGCAAAGCCACCTGCAGCAGAAACCCCTGTGGTAAAAGCACCTGCAGCAGAGACACCTGTGGAAAGGCACCTGCAGCAGAGACACCTGTGGCAAAGGCACCTGCAGCAGAAACCCCTGTGGCAAAGGCACCTGCAGCAGAGACACCTGTGGCAAAGGCACCTGCAGCAGAAACCCCTGTGGCAAAGCCACCTGCAGCAGAAACTCCTGCGGCAAAGCCACCTGCAGCTGAAACCCCTGTGGTAAAAGCACCTGCAGCAGAGACACCTGTGGCAAAGGCACCTGCAGCAGAAACACCTGTGGCAAAGGCACCTCCAGCGGAAACCCCTGTGGTAAAAGCACCTGCAGTAGAAACACCTGTGGCAAAGGCACCTGCAGCGGAAACCCCTGTGGTAAAAGCACCTGCAGCAGAAACCCCTGTGGTAAAAGCACCTGCAGCAGAGACACCTGTGGTAAAAGCACCTGCAGCAGAGACACCTGTGGCAAAGGCACCTGCAGTGGAAACCCCTGTGGTAAAAGCACCTGCAGCAGAGACACCTGTGGCAAAGGCAACTCCAGCAGAAACCCCTGTGGTAAAAGCACCTGCAGTAGAGACACCTGCGGCAAAGGCACCTGCAGCAGAGACACCTGTGGCAAAGGCACCTGCAGCAGAAACACCTGTGGCAAAGCACCTGCAGCAGAGACACCTGTGGCAAAGGCACCTGCAGCGGAGACCCCTGTGGCACCTGCAGCAGAAACCCCTGTGGTTAAAAGCACCTGCAGTAGAAACCCTAGTGGTAAAAGCACCTGCAGCAGAAACCCCTGTGGTAAAAGCACCTGCAGTAGAAACCCTAGTGGTAAAAGCACCTGCACCAGAGACACCTGTGGCAAAGGCACCTGCAGCAGAGACACCTGTGGCAAAGGCACCTGCAGCGGAGACCCCTGTGGTAAAGGCACCTACAGCAGAAACCCCTGTGGTAAAAGCACCTACAGCAGAAACCCCTGTGGTAAAGGCACCTACAGCAGAGACACCTGTGGCAAAGGCACCTGCAGCAGAGACACCTGTGGCAAAGGCACCTGCAGCGGAGACCCCTGTGGTAAAGGCACCTACAGCAGAAACCCCTGTGGTAAAAGCACCTGCAGTAGAAACCCTAGTGGTAAAAGCACCTGCACCAGAGACACCTGTGGCAAAGGCACCTGCAGCAGAGACACCTGTGGCAAAGGCACCTGCAGCAGAGACCCCTGTGCAGGCACCTACAGCAGAAACCCCTGTGGTAAAAGCACCTGCAGTAGAAACCCTAGTGGTAAAAGCACCTGCACCAGAGACACCTGTGGTAAAAGCACCTGCAGCGGAGACCCCTGTGGTAAAAGCACCTGCAGCAAAACCCCCTGTGGTAAAAGCACCTGCAGCAGAGACACCTGTGGCAAAGGCACCTGCAGCAGAGACCTCTGTGGCAAAGGTACCTGCAGTAGAAACACCTGTGGCAAAGGCACCTGCAGCAGAAACCTCTGTGGCAAAGGCACCTCCAACAGAAACCCCTGTGGCAAAGGCACCTCCAACAGAAACCCCTGTGGCAAAGGCACCAGTAGCAGAAACCCCTGTGGCAAAGGCACCAGTAGCAGAAACCCCTGTGGCAAAGGCACCTGCAGCAGAAACACCTGTGGCAAAGGCACCTGCAGCAGAGACACCTGTGGCAAAGGCACCTGCAGCAGAAACACCTGTGGCAAAGGCACCTGCAGCAGAAACACCTGTGGCAAAGGCACCTCCAGCAGAAACCCCTGTGGTAAAAGCACCTGCAGCAGAGACACCTGTGGCAAAGGCACCTGCAGCAGAAACCCCTGTGGTAAAAGCACCTGCAGCAGAGACCCCTGTGGTAAAAGCACCTGCAGCAGAAACACCTGTGGCAAAGGCACCAGTAGCAGAAACCCCTGTGGCAAAGGCACCTGCAACAGAAACTCCTGTGGCAAAGACACCAGTAGCAGAAACCCCAGTGGCAAAGACACCTGCAGCAGAGACACCTGTGGCAAAGGCACCTGAAGTGAAAACACCTTTAGTTGAAACACCTGTGGCAAAGAAACTAGTAGTGGAAACACCAGTGATAAAAGCACCTGTTGCACAAACACCTCTTGCAAAGGTACCTGAAGTGAAAATCACTCCACCAGAAATACCTGCTGTGAAAGAACCTAAAGTAGATGCTCCTGTTTCAAAGACGTCTATAACAGAACTATCTAAGGAGAAAGTACCTGTAGCAGGAATAACTGTGGCAAAGTCGCCTGATGTTCAACCACCTGCCACAGAAGTACCTGCAGCAAAGCCATCTATAGTAGAAACCCCTGTGGCAAAGGCACCTGAAGTTAAAGCCCCTGTTATAGAAACACCAGCCAAGACACCTGAAGTAAAACAACCTGAAGTAACACCTGTTGTTGAAAAGGGTAAACCTGTAGTTGTAGCATTTTCACAGCCTGACACaaaacctgctgctgctgtggaaaGTCCAGCAGAGGGCTCCAGCAAAACACAAACCTTtGCTGAGCTGTGCTCATTCTGTAACAAGCCTGTGGATGGAAATGTGAAAATCTCTTTGAACATTCCTCCGATCTGCTGCCACCCAGAATGCTTTAAGTGTGGTACGTGCGGTAAGCCGCTGGGTGACCTGCTCTTCTCCATGTTCCACCATGAGGGGAAGATTTACTGCAATGCCTGTTTCGAAGCCGTCATGCACTTCTGATAATTCGCTCCACAACAACCGATGCATCACACCCAGCAGCCCATGGCCACCTCGGAACTATCATGGCAAACTCACAAGCCACTTAAACCAAACCTATTAACAAGCACATTCAAACTGGCCAATCAGCATTGAGCACTATGCATTGAGTCTTGTCTTTTTTAttctaacaataataatataatctgtAAATgacattaaacatgttttatcttCTGTGTGTAACCTGATTAACATTGTCCTAAAGAGCAACAATAAAATGTCCACTgaactgca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002649623.1 lncRNA upstream 17560 37616778 ~ 37620270 (+) True LOC111191733
TU32558 lncRNA upstream 25229 37612171 ~ 37612601 (+) True G24237
TU32551 lncRNA upstream 52540 37582120 ~ 37585290 (+) True G24231
TU32548 lncRNA upstream 60938 37571254 ~ 37576892 (+) True G24228
TU32527 lncRNA upstream 85577 37551538 ~ 37552253 (+) True G24219
TU32575 lncRNA downstream 2028 37646078 ~ 37651113 (+) True G24242
TU32542 lncRNA downstream 7175 37651225 ~ 37714382 (+) False LOC111194342
TU32587 lncRNA downstream 77886 37721936 ~ 37724137 (+) True G24253
TU32607 lncRNA downstream 119325 37763375 ~ 37764318 (+) True G24271
TU32686 lncRNA downstream 211392 37855442 ~ 37857225 (+) True G24317
XM_022667417.1 mRNA upstream 202 37636336 ~ 37637628 (+) True LOC103021778
XM_022667422.1 mRNA upstream 212 37633781 ~ 37637618 (+) False LOC103021778
XM_007235849.3 mRNA upstream 119963 37510934 ~ 37517867 (+) True igbp1
XM_007235852.3 mRNA upstream 133877 37497889 ~ 37503953 (+) True LOC103022398
XM_022667349.1 mRNA upstream 147597 37438083 ~ 37490233 (+) True eda
XM_007239970.3 mRNA downstream 325184 37969234 ~ 37975259 (+) False LOC103046026
XM_007239969.3 mRNA downstream 327588 37971638 ~ 37975259 (+) True LOC103046026
XM_015603274.2 mRNA downstream 340662 37984712 ~ 37988933 (+) True LOC103045011
XM_007240826.3 mRNA downstream 700339 38344389 ~ 38350324 (+) True col10a1
XM_022667439.1 mRNA downstream 715410 38359460 ~ 38379336 (+) True LOC111191729
TU32264 other upstream 1198860 36432208 ~ 36438970 (+) False ar
TU31951 other upstream 2388175 35226849 ~ 35249655 (+) False trdn
TU31950 other upstream 2391531 35226849 ~ 35246299 (+) False trdn
TU31552 other upstream 3714979 33894375 ~ 33922851 (+) False cnksr3
TU31174 other upstream 4555968 33076654 ~ 33081862 (+) False LOC103037425
TU32737 other downstream 284305 37928355 ~ 37933989 (+) True G24345
TU32794 other downstream 448924 38092974 ~ 38098324 (+) True G24390
TU32857 other downstream 588543 38232593 ~ 38237041 (+) False G24431
TU32915 other downstream 715285 38359335 ~ 38382310 (+) True G24463
TU33020 other downstream 941389 38585439 ~ 38586278 (+) True G24534

Expression Profile