RNA id: TU32551


Basic Information

Item Value
RNA id TU32551
length 2861
lncRNA type inter_gene
GC content 0.59
exon number 3
gene id G24231
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 37582120 ~ 37585290 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTGTGTTGTGGGCATACTCCGCCCACTTCAGCTGGTCGGACCAGGTGGAAGGGGTGGACGAGGCCAGACAGCGGAGGGTCCGTTCCAAGTCCTGGTTGACCCTCTCAGTCTGGCCATTGGATTGGGGGTGAAACCCAGAGGAGAGGCTGGCCTCTGCCCCCAACAGATGACAGAAGGCACCCCAGAACCGGTCTGACACAATGTCCGCAGGTGGTCCATGGATGCGGACCACCTGGTCCAGCAGCACCTCGGCCGTTCCCTGTGCGGATGGCAGTTTTGGTAGCGCGACAAAGCGTGCCGCCTTGGAAAACCTGTCCACAATGACTAGTATCACGGTGTTGCCTCGGGATGGGGGCAACCCCGTGATAAAGTCAAGGGACAGGTGAGACCAGGGATGCGAGGGAATGGCCAGGGGGCGCAACAGACCCGTGGGTCTGGTTCTGGGGTCCTTACAGTGAGCGCAAACTTCACAGGCGACCACGTGAGAGCGCACGTCCCTCTCCATCTGTGGCCACCAAAAACGACGACGTAGAAATTCCAACGTGCGCATGGCTCCTGGATGTGCAGTCTGGGGAGAGGGCGTGGGTTTAGACGCTTGGCCTGCTGGATGTAGGCCAAGTTCTTATGGTCTGTCCAGACCAGAAAGGGGTGTTCCGCCCCCTCTAGCCAATGCCTCCACTCTTCCAGGGCGAGCTTCACAGCCAGGAGCTCCCGGTCTCCCACGTCGTACCTCTGCTCGGCAGGTGTAAGACGGTGGGAGTAGTAGGCGCAAGGGTGCAGCCGGTTTCCAGGCCCTGATCGCTGGGACAAGACTGCCCCTACGCCTACTTCAGAAGCATCCACCTCTACGACAAACGGAAGTCCCGGATCAGGCAGCTGGAGAACTGGGGCCCTGGTCAACAGACGCTTGATGGCGTCAAATGCTTCCTGGGCCTCTGTGGACCAGCTGAACCGCCCTAACGTCTTCCTCGTTAGGGCAGTTAGCGGGGCAGCCACAGAGCTAAAATTCTTCACAAAACGGCGGAAGAAATTTGCAAAGCCCAGGAAGCGCTGGACCAGGCGCACTGAGGTGGGCTGAGGCCAGTTCTCCACTGCCTTGATCTTGGTGGGGTCCATGCGCAGTGTGTTGTGCGACACAACAAAACCCAAAAAGGAGATGGTCTGCGCATGGAACTGGGACTTCTCAAGTTTGACATAGAGGTGGTTCTCAAGGAGCAGCTGGAGGACGCGTCGGACATGGGTGACGTGTTCGTCTACAGACCTGCGGTAGACAAGTATATCGTCCAGGTAGACGAACACGTACCGGTCCAAGGCCTCCCGAAGGACCTCATTAATAAACCCCTGGAAGACGGCAGGGGCGTTCATCAACCCGAACGGCATAACTAAGTACTCGTAGTGCCCGGACGGGGTGATGAACGCAGTCTTCCACTCGTCACCTGCCCTGACCCTGACCAGGTTGTAGGCACTGCGCAGGTCCAGCTTGGTGAAGATGGTAGCCCGCTGCAGTGCCTCAAAGGCAGATGACATAAGGGGCAAGGGGTAACGATTTTTTATGGTGATCTTGTTGAGGCCTCTGTAGTCTATACAGGGCCTCAACCCAACCTCTTTCTTACCCACAAAGAAAAACCCGGCTCCCGCCGGGGAGGTTGATGGCTGAATAAAACCCAGAGCGAGGGCCTCCTGGATGTAGTCCTCCATCGCTCTGCGTTCTGGGCCAGAGAGGGAGAACAGTCTTCCCTAGGGGGACTAGTCCCAGGGAGGAGGTCTATAGAGATGTCACAGGGGCGGTGGGGGGGCAGTATCTGGGCCTGTCGTTTGCTAAAGACCTCCCGGAGGTCCTGATATTCTTTGGGTACCCGAGAAACATCAGGACCTCCGAGGTCGGGGTCTGCAACCTCAGGGACTCTGGAGGGCTGAAGGCAGGAGGTTTGACAGGCTGGCCCCCACCTCAGGACTGAGCGGGTCAGCCAGTCGACATGGGGGTTGTGTCGCTGGAGCCAAGGGAACCCCAAAATCAGCTGCAAGTCGGGGGCACTTATGATGTATAGCATGATCTGCTCTGAATGAGCCCCGACTCGCAGCATGAGGGGGCGTGTTTGGTGAGACACTACCCCTGGCTCCAGTGACCGCCCGTCGATGGCTGCTATGGGCAGTGGTTCCCGTAGGGGGACCAGTGGCAAACCAAGCCTTTTTGCAATGGCCACGTCCAGAAAATTACCAGCTGCCCCAGAGTCCAGAAAGGCGGGAAGACGCACCTCCGATGCCTCCGACACCAGTGTTGCCTGGAGGAATACTCCCGAGGTTCGAGGGAGCCCTGGCAGGTCTGTTAGGGGCGCTTCTCCTCCTAACGGACGATTCTTTGCTGCCAACTCTGGACAGGCGACGCGCTGGTGCCCCACACCTCCACAGTAAAGGCACCGCCCTTCCCGCATGCGGGCATCGCGCTCTTGCCTTGGCAGACGGGTGTGTCCCAACCGCACCCCGTGGTCAGGTCGCTTCTCAGCTGCCAGCGATGGTCCAACAGCTGAGGGTTGACCGTGAGGGCCTTGGACGGTTCCCGTAACCCGCACTCTGCGCCTCTGCCTAAGGCGCTGGTCCAGTCTCTGGGTCAGCTCGATCAAGTCATCAAGTGAGGACGGAGGGTCGCGGTGAGCGAGCTCATCCTTAAGGTCCTCACTGAGACCATGATAGAAGGCGCTGACCAGAGCACTGGAGTTCCACCCGCTCTCAGCCGAAAGCGTGCGAAATTCGATGGCATAGTCTGGGACAGACCTCCCCTCCTGACGTAGGTTCAGGAGGCGGGTCCCTGCTTCCTCTCCTCGAGCTGGAAGGTCAAATGACCGCAAAAGAGCAGCTGCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32548 lncRNA upstream 5228 37571254 ~ 37576892 (+) True G24228
TU32527 lncRNA upstream 29867 37551538 ~ 37552253 (+) True G24219
TU32487 lncRNA upstream 89842 37487138 ~ 37492278 (+) True G24188
TU32459 lncRNA upstream 268791 37231790 ~ 37313329 (+) True G24168
TU32540 lncRNA downstream 3816 37589106 ~ 37714382 (+) False LOC111194342
TU32558 lncRNA downstream 26881 37612171 ~ 37612601 (+) True G24237
XR_002649623.1 lncRNA downstream 31488 37616778 ~ 37620270 (+) True LOC111191733
TU32533 lncRNA downstream 49570 37634860 ~ 37654878 (+) False LOC111194342
TU32541 lncRNA downstream 49570 37634860 ~ 37707921 (+) False LOC111194342
XM_007235849.3 mRNA upstream 64253 37510934 ~ 37517867 (+) True igbp1
XM_007235852.3 mRNA upstream 78167 37497889 ~ 37503953 (+) True LOC103022398
XM_022667349.1 mRNA upstream 91887 37438083 ~ 37490233 (+) True eda
XM_022685124.1 mRNA upstream 578345 36983182 ~ 37003775 (+) True c3hxorf56
XM_022685101.1 mRNA upstream 785224 36694526 ~ 36796896 (+) True stard8
XM_022667422.1 mRNA downstream 48491 37633781 ~ 37637618 (+) False LOC103021778
XM_022667417.1 mRNA downstream 51046 37636336 ~ 37637628 (+) True LOC103021778
XM_022678185.1 mRNA downstream 52540 37637830 ~ 37644050 (+) False LOC111194342
XM_007239970.3 mRNA downstream 383944 37969234 ~ 37975259 (+) False LOC103046026
XM_007239969.3 mRNA downstream 386348 37971638 ~ 37975259 (+) True LOC103046026
TU32264 other upstream 1143150 36432208 ~ 36438970 (+) False ar
TU31951 other upstream 2332465 35226849 ~ 35249655 (+) False trdn
TU31950 other upstream 2335821 35226849 ~ 35246299 (+) False trdn
TU31552 other upstream 3659269 33894375 ~ 33922851 (+) False cnksr3
TU31174 other upstream 4500258 33076654 ~ 33081862 (+) False LOC103037425
TU32543 other downstream 53148 37638438 ~ 37654878 (+) True LOC111194342
TU32737 other downstream 343065 37928355 ~ 37933989 (+) True G24345
TU32794 other downstream 507684 38092974 ~ 38098324 (+) True G24390
TU32857 other downstream 647303 38232593 ~ 38237041 (+) False G24431
TU32915 other downstream 774045 38359335 ~ 38382310 (+) True G24463

Expression Profile