RNA id: TU32587


Basic Information

Item Value
RNA id TU32587
length 2178
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id G24253
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 37721936 ~ 37724137 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CATTCATGCAGGGAGTCTGCATTTCTTTTCTGACACAGGTGGGATTTAAGATAAGAAGAAAACTTGAGGATAAAGAGAAGAAAGACAAGAAAAGGGAATGAGAACCTACTGCTAACCTTACATGCAATCTTAATCAGAATTAATCATAAATAGCAGTGTTTATAAAATGAcctaaacaaatatattttaacagatTCATCTCCTGGTGATTTATAAAACTAGAGAttcactttctcttttctttaacatttatacagtatttaactttattttaaagaacacaatcacagttttttagaGTCAttcaactaaaataataaactataaaaccTGTGATTTTAACTTATCTTTTTTCACCACGTCATTGTGATCTAAAGGGCaaaagcacagagagagaaaaagaagcagaaagtcTTCCTATAAGAAGCATTTAGTTCATGACCGAACTCTTTTAGCGACCGCACTCTTTTAGTGCCTGTTCTGTTTGTATATGAAGCTTCAATAAACATTTAGATGTCTAGGACCAGAACCCATGGAATAAAGGTAGGGTAGACATTTCTGTCAGTTTAATGGTGGACAGACTGCTAAAATGAGTGTTGGAACCGACTTCTGGACTACATCTGCACCACTCTGAAATGGAGCTAATTTGAAATGAGACTGAGGTACTTTGGATTTGGGCCGAACTGCTCTGGAATAGTAATGACCAGTTCTGAAATGGAGCAGAACTGTCAGGTGGACCACTTGACTACAGCTGAGCCACTCTAATGTGGAGCTCAACTGCTCTGCATAGACTGTTCTATAGTGCATTAATATAGTGAAGCCAAACTGTCTTGTATTAGTAATTAACTGCCTTAGAATAAggctgaacagaaaaaaaagaatcagaatAGACGTTAAAATTAGAATGCTCTGGAACTGAGTCAAACTACTCTGGAATGCTTTTAAACTGTTCTTGACTGGAGCTGTATTGGTCTggaataaaactgaaatactATACAATGATGCATTGCATCTAAACCACTAAACCAGTAGATATGAACTGCATCAGAATACGTAAGAACCTATCAAGAATAGAACTGAATAACTCTGGAATGGGACTAAACTCTACAGTGTGTAGTGTAGCTCCAGAGAGGGACTTATAAATAGGCATGAACTGGGCATGAACAACCGAGCTGAATTACTCTGGATTGAGCTGAATCACACAACAGTTATGCTCTACAGCTAGACCACTAAATTAAAAGAAGTAAACTGTAATAGAACCACTTTAGGTGTGAACCACTCTAAACTTAGGCTGAATCATACTGAAAGGGGACTAAACTGTCACAGAATGGAACTGAGCTACTCTGTATTTGACTTTAAAGCTAAACCATTACAAATCAACAGAGATGAACTGCAATAAAGTCAAAAATAAATTGCTTCAGAGTAGATCCTCTGAATTCCTCTCTAATGCTACTTAACATTTCTGGAACAGTCCTGAATTAAGGTCCTCTATACACCAGAATAAGCTTGAACTGCTACAGATCAGAGATGGGTTGCTAATAAAAGGGACTAATCTGCTTTGTCATGGAGTTGAACTGCTCTAGAGTTGATTGGTGGAGACTAGAATCAAGTCAAAGTTTTTGGACATCTTTCAGCTGCAGAAGTTGTAACCTTGATGGGTGTGGCGTCACTTCTGCTGTGAACATACAGCGAGCAGCCAGGGGAGCACCATATCATCACTTGTGGTGTGGCTTGCTATTGAGACCAATGTCTGCCTGATGGTTctaaagtactgagagcactcAGAGGGAAGCATTGTGATGTGAGCATGCTCTGGGTCGATTTCTTACAGAAGCAGTGGAGCTTAAGCACTGTGACACTGAAATGGCTCCCAGTTCAGCTGGACTCTCACAGCAGTTGCATCATTTGTTTGCAggttgttatttgtttgttggctTGCATGTCCAGGCGAGCTGGAGGGATGTTCTGTAAGGCACTGCGAGACGACAGGTCGTGGAATCCGAGAGTGCAGTCGCTATGGTTACAGCAAAACCAGAAGGAAGGGAGATAGAGCTGGGGTGTCTGTTGAGGAGAGTGGTGGGAGGGGCCACTCTATATCCTGTCCAAATTCAAAGTCTCTGAGAATCTGGTCCCCCCCCCCGTGCATCTGTGACATCTTCAGGTGGGGACGAGCATCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32540 lncRNA upstream 7554 37589106 ~ 37714382 (+) False LOC111194342
TU32542 lncRNA upstream 7554 37651225 ~ 37714382 (+) False LOC111194342
TU32541 lncRNA upstream 14015 37634860 ~ 37707921 (+) False LOC111194342
TU32533 lncRNA upstream 67058 37634860 ~ 37654878 (+) False LOC111194342
TU32575 lncRNA upstream 70823 37646078 ~ 37651113 (+) True G24242
TU32607 lncRNA downstream 39238 37763375 ~ 37764318 (+) True G24271
TU32686 lncRNA downstream 131305 37855442 ~ 37857225 (+) True G24317
TU32701 lncRNA downstream 139225 37863362 ~ 37864909 (+) True G24324
TU32693 lncRNA downstream 141698 37865835 ~ 37868411 (+) False G24321
TU32694 lncRNA downstream 141698 37865835 ~ 37868411 (+) True G24321
XM_022678185.1 mRNA upstream 77886 37637830 ~ 37644050 (+) False LOC111194342
XM_022667417.1 mRNA upstream 84308 37636336 ~ 37637628 (+) True LOC103021778
XM_022667422.1 mRNA upstream 84318 37633781 ~ 37637618 (+) False LOC103021778
XM_007235849.3 mRNA upstream 204069 37510934 ~ 37517867 (+) True igbp1
XM_007235852.3 mRNA upstream 217983 37497889 ~ 37503953 (+) True LOC103022398
XM_007239970.3 mRNA downstream 245097 37969234 ~ 37975259 (+) False LOC103046026
XM_007239969.3 mRNA downstream 247501 37971638 ~ 37975259 (+) True LOC103046026
XM_015603274.2 mRNA downstream 260575 37984712 ~ 37988933 (+) True LOC103045011
XM_007240826.3 mRNA downstream 620252 38344389 ~ 38350324 (+) True col10a1
XM_022667439.1 mRNA downstream 635323 38359460 ~ 38379336 (+) True LOC111191729
TU32543 other upstream 67058 37638438 ~ 37654878 (+) True LOC111194342
TU32264 other upstream 1282966 36432208 ~ 36438970 (+) False ar
TU31951 other upstream 2472281 35226849 ~ 35249655 (+) False trdn
TU31950 other upstream 2475637 35226849 ~ 35246299 (+) False trdn
TU31552 other upstream 3799085 33894375 ~ 33922851 (+) False cnksr3
TU32737 other downstream 204218 37928355 ~ 37933989 (+) True G24345
TU32794 other downstream 368837 38092974 ~ 38098324 (+) True G24390
TU32857 other downstream 508456 38232593 ~ 38237041 (+) False G24431
TU32915 other downstream 635198 38359335 ~ 38382310 (+) True G24463
TU33020 other downstream 861302 38585439 ~ 38586278 (+) True G24534

Expression Profile