RNA id: TU32701



Basic Information


Item Value
RNA id TU32701
length 714
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G24324
representative True

Chromosome Information


Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 37863362 ~ 37864909 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence


tttgcacttgggctataagctcaatattaaatatttcgtttgcttagaaattattttatatttttaaaccattttaaattatattagataagaggaaattcgttcagacatcatttttgtaggccaggcttttgtaaccgatttagcccctactgttgccacattaccccttacgttttattatataaatcagttttgaagagcctgcattttttttatcatgtataatagaggtctgcgcgagactgatttttaaacccactcttccacgctcccgcgtttctgtctcgttaccgctccgcaaaaaaattgcttcttttaatcccgcgcccgcccgccacatagtgcggtcccgttccttaccccagtccaaacaccatcggtgtgtgcgtgtgtgtgtcggtccatcctgcgcgttgagagttttctttagttttttttttttttttttttacaattattacagttttcttaactatttattaatttgctcccgcatcgtctggattaaactcccgctccagccaataacagttcagttctgtcccgcgcgcaagatattctgacgggacccgcgaaaacagaagtggttagagtgaggtggaactctggaaaggagaaaaaaaacgaatatccgaataccaaaattaaaaaccgaatacctactcaacgaacgaatatccgaatacccgaatattcgggtccagccctagg

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU32686 lncRNA upstream 6137 37855442 ~ 37857225 (+) True G24317
TU32607 lncRNA upstream 99044 37763375 ~ 37764318 (+) True G24271
TU32587 lncRNA upstream 139225 37721936 ~ 37724137 (+) True G24253
TU32542 lncRNA upstream 148980 37651225 ~ 37714382 (+) False LOC111194342
TU32575 lncRNA upstream 212249 37646078 ~ 37651113 (+) True G24242
TU32693 lncRNA downstream 926 37865835 ~ 37868411 (+) False G24321
TU32694 lncRNA downstream 926 37865835 ~ 37868411 (+) True G24321
TU32708 lncRNA downstream 19558 37884467 ~ 37956414 (+) True G24330
TU32709 lncRNA downstream 19558 37884467 ~ 38006696 (+) False G24330
TU32715 lncRNA downstream 21072 37885981 ~ 37888753 (+) True G24334
XM_022678185.1 mRNA upstream 219312 37637830 ~ 37644050 (+) False LOC111194342
XM_022667417.1 mRNA upstream 225734 37636336 ~ 37637628 (+) True LOC103021778
XM_022667422.1 mRNA upstream 225744 37633781 ~ 37637618 (+) False LOC103021778
XM_007235849.3 mRNA upstream 345495 37510934 ~ 37517867 (+) True igbp1
XM_007235852.3 mRNA upstream 359409 37497889 ~ 37503953 (+) True LOC103022398
XM_007239970.3 mRNA downstream 104325 37969234 ~ 37975259 (+) False LOC103046026
XM_007239969.3 mRNA downstream 106729 37971638 ~ 37975259 (+) True LOC103046026
XM_015603274.2 mRNA downstream 119803 37984712 ~ 37988933 (+) True LOC103045011
XM_007240826.3 mRNA downstream 479480 38344389 ~ 38350324 (+) True col10a1
XM_022667439.1 mRNA downstream 494551 38359460 ~ 38379336 (+) True LOC111191729
TU32543 other upstream 208484 37638438 ~ 37654878 (+) True LOC111194342
TU32264 other upstream 1424392 36432208 ~ 36438970 (+) False ar
TU31951 other upstream 2613707 35226849 ~ 35249655 (+) False trdn
TU31950 other upstream 2617063 35226849 ~ 35246299 (+) False trdn
TU31552 other upstream 3940511 33894375 ~ 33922851 (+) False cnksr3
TU32737 other downstream 63446 37928355 ~ 37933989 (+) True G24345
TU32794 other downstream 228065 38092974 ~ 38098324 (+) True G24390
TU32857 other downstream 367684 38232593 ~ 38237041 (+) False G24431
TU32915 other downstream 494426 38359335 ~ 38382310 (+) True G24463
TU33020 other downstream 720530 38585439 ~ 38586278 (+) True G24534

Expression Profile


TU32701 Expression in all Baseline Samples

Bar chart with 16 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 10.
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TU32701 Expression in each Bioproject

Bar chart with 7 bars.
TU32701 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 100.
End of interactive chart.