RNA id: TU32709


Basic Information

Item Value
RNA id TU32709
length 215
lncRNA type read_through
GC content 0.36
exon number 3
gene id G24330
representative False

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 37884467 ~ 38006696 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CCAGTCTGGCGTTGAGTTCACGGTTGTAATACAAACCCTGCAGAGCCGTTAGACACTTTAACCTCACCTCCCCCTGCtgctcagacagacagagagaaagacaagagaGACAAGaaataaagtgagagagagagattgagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagaaagaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32693 lncRNA upstream 16056 37865835 ~ 37868411 (+) False G24321
TU32694 lncRNA upstream 16056 37865835 ~ 37868411 (+) True G24321
TU32701 lncRNA upstream 19558 37863362 ~ 37864909 (+) True G24324
TU32686 lncRNA upstream 27242 37855442 ~ 37857225 (+) True G24317
TU32607 lncRNA upstream 120149 37763375 ~ 37764318 (+) True G24271
TU32760 lncRNA downstream 21077 38027773 ~ 38029380 (+) False G24359
TU32761 lncRNA downstream 21077 38027773 ~ 38036748 (+) False G24359
TU32762 lncRNA downstream 21077 38027773 ~ 38036748 (+) True G24359
TU32796 lncRNA downstream 89854 38096550 ~ 38098324 (+) False G24390
TU32856 lncRNA downstream 225897 38232593 ~ 38237041 (+) True G24431
XM_022678185.1 mRNA upstream 240417 37637830 ~ 37644050 (+) False LOC111194342
XM_022667417.1 mRNA upstream 246839 37636336 ~ 37637628 (+) True LOC103021778
XM_022667422.1 mRNA upstream 246849 37633781 ~ 37637618 (+) False LOC103021778
XM_007235849.3 mRNA upstream 366600 37510934 ~ 37517867 (+) True igbp1
XM_007235852.3 mRNA upstream 380514 37497889 ~ 37503953 (+) True LOC103022398
XM_007240826.3 mRNA downstream 337693 38344389 ~ 38350324 (+) True col10a1
XM_022667439.1 mRNA downstream 352764 38359460 ~ 38379336 (+) True LOC111191729
XM_022667444.1 mRNA downstream 374894 38381590 ~ 38400321 (+) True LOC103029663
XM_007259909.3 mRNA downstream 410054 38416750 ~ 38427918 (+) True hs3st5
XM_007259908.3 mRNA downstream 421953 38428649 ~ 38438064 (+) True hdac2
TU32543 other upstream 229589 37638438 ~ 37654878 (+) True LOC111194342
TU32264 other upstream 1445497 36432208 ~ 36438970 (+) False ar
TU31951 other upstream 2634812 35226849 ~ 35249655 (+) False trdn
TU31950 other upstream 2638168 35226849 ~ 35246299 (+) False trdn
TU31552 other upstream 3961616 33894375 ~ 33922851 (+) False cnksr3
TU32794 other downstream 86278 38092974 ~ 38098324 (+) True G24390
TU32857 other downstream 225897 38232593 ~ 38237041 (+) False G24431
TU32915 other downstream 352639 38359335 ~ 38382310 (+) True G24463
TU33020 other downstream 578743 38585439 ~ 38586278 (+) True G24534
XR_002649597.1 other downstream 660813 38667509 ~ 38717435 (+) False fyn

Expression Profile