RNA id: TU32727


Basic Information

Item Value
RNA id TU32727
length 2299
lncRNA type inter_gene
GC content 0.43
exon number 8
gene id G24340
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 37938839 ~ 37943934 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TACTAGATTTATTATTCCTGAAACGTCTGTCCTcttgggggggaaaaaaataaatgtacaaaagtgtGACCACAGTACAAAGAATTTCATAatagatagatgggtggatagaaagaaaaggagagggaggagagaaagagaaatagaggagatagaaagaggaggagaagggtagaaagaaagagagagaaaggggaatagaagagaaagaaaaagatttcTATAATGTGGAGTGTATGACAGATTCTCTCACTAGCACACTTGCTCGCTCTCACGCACGCACGCGTTTAACAGAAAGTCAAACACAACAGAATAATAATCATGATTATAATCAtcagttaaaaaatacaaaatacacactgCATCAACACAGCAGTGAAACATGCAGTAACACAATCATccaccagagagagaaagagacagatggagatctagaaagagagagaagggggaaaaaaaagaaagagatgtttgtgtttgtgctgaagataaaactataaaatcgTTGTTTATAAAATCCCGCCAATGTTTCCGATGTTCATTTCGGAACGTCTCCTGCAGCGTCCAGAAAACATTCCCCAAACGTTCCTCAAGCATTCTGCTTACATTTTGCATATGAGCTTTAGGGCCAAATTCTGGCCTGACCGCGTCCATCATGGAGTCCAAAAGGTCAAAAGTCagtttaaaataacattgaaacaATAGACACAAAACTAAAGCAGCGGCTGCATAAATGACATCATAAGATGAAGAtgaaaaaggggaaaaataaaGGAGAGTAAAAGAAAGCTTAAGTAAAAATTGAATAAATAGAGAGCTTTCTTTAAAAAGAGACTATAAAGATCAAGAAAGGGTAAAAGataaggaggagaaaaaaaattaaaacaaaattaagtgttctcacaccagcactatttggtccggttaaaatggACTCCGGTTCGTTGGCAGTCTTGGTGCAGATCGTTTCGACAGGTGTGAAGAGTAATCAGTACACTCCGATGAGCTGACCGCACTAAAATACAAACTAGTCTGAAACACAGGACCAAAACCAAGACGCTCCAAGTTAACTCTTTAACTCTTTCGGACCAGAGCAAATTAActataggtgtgaaaacacccaaaacacaGATTTAAAGTAAAAGACGAAAACAGATTGAAGAAAGCAGATGAAAAGATGAAACAACAAAGtgttcaaaaataataataatacagagaggaaaaaaaacagccgGAGGGGAGGGTGGCCTTCGCTTCCTCACAGTGATGACACACGTGGGGGGATAAGGGGTTTGCTATGGTAGCAGCAGGGAGCTGCTACTACGGTCAAGTTTTTTGCCTTTAGAGAGAGCAGCGACCTGCTTCAGCAGCTCTCTGTTCTTAGACTGCTGTTGCTCCATGGCCTCTTTGTGTGCCTTCTCCATGTTGTTCATCTTCACACGCATGTTGGACTCCTGATACTGAAAATCAGCCTTCAGCTCAGTCAACTTCCTGTCTTTCTCAAGAATGGTCTGGTCCCTCTGCTGCAGCATACGCTTCAGTGACATCACTTCCTCTTTCAGCTGACTGATGAGGATAAAATTATCGGTTCCTCCAGAGTCCATCGATTGAGCGACAGAACTACTGCAGaccgagagagagcgagagagagacagagagaaaggcgTCACTTTGCTTAAAGAGCTCATATCTGAGTACTccgtctctcgctctctcaggtGTGCGTACCTGTCTCCGTTGGATGGTTTGAGCTCTAGTTTGGGTTTCTTCTTTGGAGTTTCCTTCTGGATTGAGGAGGATTTATGgCTCTGATCCCACAGGCGCTGCTCCTGCTCTGGACTCAGACTGCCACTTagcTTGTGGTGAGAGCTGCTGTGTCGATGATGATGTCGATGCTCTTTGTCACTAAGCGATGATGTGTTGGAGTGGGAGGAGCCAAGGCCTTTCCTTTGTTCTTTAGTTTTTTGAAGAACACGCCGATACGACAGAGTGCAGAGCCAACACAGCAGCTTACCATCCACCTTTCTACGCCCCTCCTCTTTCCTGTCGAAGGCACACTGCTGTTTGCACTGTTCGCAGGTCTGGGGTGGGCCATATTTCTTCTCGGAGTTTGTACAGCGCTGGCACTTTGTCCCGATAAAAGCAGCAATGATGTTACAGTACTGACACGGCTTCGGCGTTCCAAACTGTTTGACGTTTTGTGCGCATTTCTTGCAAATGGTGTTGGTTTtgCTCTCCTGCTGAAACTCGGTCCTGCAGTAGGTGCATTTTACAATGGGATGCGCAATACGGCACTCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32730 lncRNA upstream 28316 37906277 ~ 37910523 (+) True G24341
TU32731 lncRNA upstream 30439 37906277 ~ 37908400 (+) False G24341
TU32715 lncRNA upstream 50086 37885981 ~ 37888753 (+) True G24334
TU32693 lncRNA upstream 70428 37865835 ~ 37868411 (+) False G24321
TU32694 lncRNA upstream 70428 37865835 ~ 37868411 (+) True G24321
TU32760 lncRNA downstream 83839 38027773 ~ 38029380 (+) False G24359
TU32761 lncRNA downstream 83839 38027773 ~ 38036748 (+) False G24359
TU32762 lncRNA downstream 83839 38027773 ~ 38036748 (+) True G24359
TU32796 lncRNA downstream 152616 38096550 ~ 38098324 (+) False G24390
TU32856 lncRNA downstream 288659 38232593 ~ 38237041 (+) True G24431
XM_022678185.1 mRNA upstream 294789 37637830 ~ 37644050 (+) False LOC111194342
XM_022667417.1 mRNA upstream 301211 37636336 ~ 37637628 (+) True LOC103021778
XM_022667422.1 mRNA upstream 301221 37633781 ~ 37637618 (+) False LOC103021778
XM_007235849.3 mRNA upstream 420972 37510934 ~ 37517867 (+) True igbp1
XM_007235852.3 mRNA upstream 434886 37497889 ~ 37503953 (+) True LOC103022398
XM_007239970.3 mRNA downstream 25300 37969234 ~ 37975259 (+) False LOC103046026
XM_007239969.3 mRNA downstream 27704 37971638 ~ 37975259 (+) True LOC103046026
XM_015603274.2 mRNA downstream 40778 37984712 ~ 37988933 (+) True LOC103045011
XM_007240826.3 mRNA downstream 400455 38344389 ~ 38350324 (+) True col10a1
XM_022667439.1 mRNA downstream 415526 38359460 ~ 38379336 (+) True LOC111191729
TU32737 other upstream 4850 37928355 ~ 37933989 (+) True G24345
TU32543 other upstream 283961 37638438 ~ 37654878 (+) True LOC111194342
TU32264 other upstream 1499869 36432208 ~ 36438970 (+) False ar
TU31951 other upstream 2689184 35226849 ~ 35249655 (+) False trdn
TU31950 other upstream 2692540 35226849 ~ 35246299 (+) False trdn
TU32794 other downstream 149040 38092974 ~ 38098324 (+) True G24390
TU32857 other downstream 288659 38232593 ~ 38237041 (+) False G24431
TU32915 other downstream 415401 38359335 ~ 38382310 (+) True G24463
TU33020 other downstream 641505 38585439 ~ 38586278 (+) True G24534
XR_002649597.1 other downstream 723575 38667509 ~ 38717435 (+) False fyn

Expression Profile