RNA id: TU32731


Basic Information

Item Value
RNA id TU32731
length 627
lncRNA type inter_gene
GC content 0.47
exon number 3
gene id G24341
representative False

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 37906277 ~ 37910523 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ggacgatatatcgtttacaaaaaaatattattgtgacaggcctagttggGTACATAAGTGTATGTgctacaagtgtgtgtgtgtatgtgtctgggTAAATACATTTACCTTCAGCTTGGTGTCCAGCAGCTCTTTGCTGGTAATGAGGTGCGTGGCTTTACACTGGTTCAGTCCGAAAGCTACAGCCTCTTCACCCAGAGTCGCATAGAGAGTTACCaGGGGGTAGTTGCGTCTGAAGCAGGCCTGGGCGGTGATTATCCACTCAGCTCGCGTCTCACAGTAGATGGCAATGTTGCTTTTTGGTGTCTGACCTAATGCAGCCAATCCAGAGCCCAGCAACTCCACTTCATGCTCCACTTCCTCATATGACTTCCAGCTGTACTCTCCCAGCaccagCTTTTGAAAGACCTTTCCATCCGGCTGAGTCTCGTTCTCTTTTGAGATGATGCTCCTCGTCCCCAGACAGGGGGTCTGTTTGAACTTGGCCACAGCATGCCGGAACAGTTTATCCAGTGTGTCTACTCCCTCAAAGTCCTGCCGGACCAGAGCCTCTTCACAGTCCACCGCCCGGTACGGACCCTCCGGATGCCCGGACACACTGCGAGCCCTGACACACTCCGACAtcct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32715 lncRNA upstream 17524 37885981 ~ 37888753 (+) True G24334
TU32693 lncRNA upstream 37866 37865835 ~ 37868411 (+) False G24321
TU32694 lncRNA upstream 37866 37865835 ~ 37868411 (+) True G24321
TU32701 lncRNA upstream 41368 37863362 ~ 37864909 (+) True G24324
TU32686 lncRNA upstream 49052 37855442 ~ 37857225 (+) True G24317
TU32727 lncRNA downstream 30439 37938839 ~ 37943934 (+) True G24340
TU32729 lncRNA downstream 30439 37938839 ~ 37942913 (+) False G24340
TU32760 lncRNA downstream 119373 38027773 ~ 38029380 (+) False G24359
TU32761 lncRNA downstream 119373 38027773 ~ 38036748 (+) False G24359
TU32762 lncRNA downstream 119373 38027773 ~ 38036748 (+) True G24359
XM_022678185.1 mRNA upstream 262227 37637830 ~ 37644050 (+) False LOC111194342
XM_022667417.1 mRNA upstream 268649 37636336 ~ 37637628 (+) True LOC103021778
XM_022667422.1 mRNA upstream 268659 37633781 ~ 37637618 (+) False LOC103021778
XM_007235849.3 mRNA upstream 388410 37510934 ~ 37517867 (+) True igbp1
XM_007235852.3 mRNA upstream 402324 37497889 ~ 37503953 (+) True LOC103022398
XM_007239970.3 mRNA downstream 60834 37969234 ~ 37975259 (+) False LOC103046026
XM_007239969.3 mRNA downstream 63238 37971638 ~ 37975259 (+) True LOC103046026
XM_015603274.2 mRNA downstream 76312 37984712 ~ 37988933 (+) True LOC103045011
XM_007240826.3 mRNA downstream 435989 38344389 ~ 38350324 (+) True col10a1
XM_022667439.1 mRNA downstream 451060 38359460 ~ 38379336 (+) True LOC111191729
TU32543 other upstream 251399 37638438 ~ 37654878 (+) True LOC111194342
TU32264 other upstream 1467307 36432208 ~ 36438970 (+) False ar
TU31951 other upstream 2656622 35226849 ~ 35249655 (+) False trdn
TU31950 other upstream 2659978 35226849 ~ 35246299 (+) False trdn
TU31552 other upstream 3983426 33894375 ~ 33922851 (+) False cnksr3
TU32737 other downstream 19955 37928355 ~ 37933989 (+) True G24345
TU32794 other downstream 184574 38092974 ~ 38098324 (+) True G24390
TU32857 other downstream 324193 38232593 ~ 38237041 (+) False G24431
TU32915 other downstream 450935 38359335 ~ 38382310 (+) True G24463
TU33020 other downstream 677039 38585439 ~ 38586278 (+) True G24534

Expression Profile