RNA id: TU32761


Basic Information

Item Value
RNA id TU32761
length 1800
lncRNA type inter_gene
GC content 0.55
exon number 7
gene id G24359
representative False

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 38027773 ~ 38036748 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

cagaCGCTTACTTCATAAaagcagtttatttttacatgagTATTATCAGTTCTATTATACAGTCAGCccttatttaaatattcaaatcaGCTGGAGCAGAAACCAGAGAAGTCAAACAGtgcagtgtacacacacactctctcttacactcacctcacacacacacaaaaacacactatcTCTcagactttctctctctctcacacacacacacacacacaatattcaTGTTTTATGATTTAAAGAAGAAATGATCCagtcagaataaaataaagatttacaTATTAGAGAAATATACAGAGAAAAGGTCATGACCAGCAGAGGGAGCTGCATCACACAAGGCTCAAGGTGTTCAGCTGTTATTGATCTGTCTGTGGAAGGTCATGTAACTGCTGTATGGTGGCCTGTGAGGCTCAAAATCAGTGTAATCATTAACACAAATAAcctaccacacacatacacacccacacacacacacacacacacttacacacaacagagataaaaactaaaaccagataCAGAAACTAACATCAAATTTCAAACTGTGATAAACACACCTGAGAATCAAAGTGCTTAAAACCACACctgaaggagtgtgtgtgtctgtgtgtgcgtgttcgTGTTTTTTGAGTTAGTGTACTTGTTGATGAATATTTTATCTTGTGATGGTTATGCAAACACCTCATACTTccaaacagaaagaaaatgtctgtttgtgtgtgtgtatgtgctctCGAATTTTCTAGCTCCGGGCATCTCTTTCGAAGGCAGGGTTGTCATAGTGAGGCTGTGTCTCCACACAAACCACCTCCAAACCTGTGGACCAATCAAACAACAGCAcacttttaaaatcaacaaaCCACTTACCACTCAAAAATTCACCACACACATTCAGAAAACAGTACTCACAAATACACCCTTTCCTCCCagtactcacactcacacacacactacccagACACATACAGTTTCTTACCATTGTGTGCTTCTCCCACTGAGTTTATAGATTCATATCCTGAAGACACTGTGTCGCTTTGTGTGTTTGAAACACTGTCAGTAGTAAGTGTATAAGAGACACTGTCAatatgtgtgtcagtgtgtggatgagagTTCTCAGTGCTGCGAGGCAGTAAATCAGGTGGAGACTCCTCTTCCaaCTCCACTCCCAGGGCTTTAAGGACGTCACATTTGCACATTGGACAGGTCCTGTGCTCCAACAGCCATGGCTCCACACATACCTTATGGAAGAAATGaCTGCAAGTGAGGACTGACAGAACGTCTCCTGGTTTGTATGTTTCAATACACACTGCACAGGAATCGGCATCAGGCCCAgtctcCTTATCTCCGTGTTTGAGTGTGCGGACCTGGAGCTGACCAATTGCCTTCTTAGCTTTTGCTTTCATCTGTCTctgtctGCGGTTCTGCACATTGCTTCTGTAGAGCCTCCGTGCTGTGTAGTAGATAAAGTATGCAACTGTTGCTGTGGTGATGACGATGAAGGAGACAGAGATGAGGAAGATGGAGTAGTGACTCATCATCGGCTCGTAAACCCGCCCCACCTCGATTGCCATTGTAACGGGCACACCCTTGTGCAGCAGCTCTGCCAGCACAGTCCCGCCCACATTACCCATCATCACTGCTACAATACTGGTacctgcacacacaaacaCAAAACCTTATATAAAAATATCCTTTTTCATAAACAGTCCTGTTTATAACTACAAAGCATAACAGCCGACAAGGAGACAAAACTCGACttatgtaaaactactgttctattttattttttatatgctg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32709 lncRNA upstream 21077 37884467 ~ 38006696 (+) False G24330
TU32708 lncRNA upstream 71359 37884467 ~ 37956414 (+) True G24330
TU32727 lncRNA upstream 83839 37938839 ~ 37943934 (+) True G24340
TU32729 lncRNA upstream 84860 37938839 ~ 37942913 (+) False G24340
TU32730 lncRNA upstream 117250 37906277 ~ 37910523 (+) True G24341
TU32796 lncRNA downstream 59802 38096550 ~ 38098324 (+) False G24390
TU32856 lncRNA downstream 195845 38232593 ~ 38237041 (+) True G24431
TU32865 lncRNA downstream 206737 38243485 ~ 38246289 (+) True G24432
TU32876 lncRNA downstream 219453 38256201 ~ 38259249 (+) True G24437
TU32917 lncRNA downstream 342188 38378936 ~ 38379278 (+) False LOC111191729
XM_015603274.2 mRNA upstream 38840 37984712 ~ 37988933 (+) True LOC103045011
XM_007239970.3 mRNA upstream 52514 37969234 ~ 37975259 (+) False LOC103046026
XM_007239969.3 mRNA upstream 52514 37971638 ~ 37975259 (+) True LOC103046026
XM_022678185.1 mRNA upstream 383723 37637830 ~ 37644050 (+) False LOC111194342
XM_022667417.1 mRNA upstream 390145 37636336 ~ 37637628 (+) True LOC103021778
XM_007240826.3 mRNA downstream 307641 38344389 ~ 38350324 (+) True col10a1
XM_022667439.1 mRNA downstream 322712 38359460 ~ 38379336 (+) True LOC111191729
XM_022667444.1 mRNA downstream 344842 38381590 ~ 38400321 (+) True LOC103029663
XM_007259909.3 mRNA downstream 380002 38416750 ~ 38427918 (+) True hs3st5
XM_007259908.3 mRNA downstream 391901 38428649 ~ 38438064 (+) True hdac2
TU32737 other upstream 93784 37928355 ~ 37933989 (+) True G24345
TU32543 other upstream 372895 37638438 ~ 37654878 (+) True LOC111194342
TU32264 other upstream 1588803 36432208 ~ 36438970 (+) False ar
TU31951 other upstream 2778118 35226849 ~ 35249655 (+) False trdn
TU31950 other upstream 2781474 35226849 ~ 35246299 (+) False trdn
TU32794 other downstream 56226 38092974 ~ 38098324 (+) True G24390
TU32857 other downstream 195845 38232593 ~ 38237041 (+) False G24431
TU32915 other downstream 322587 38359335 ~ 38382310 (+) True G24463
TU33020 other downstream 548691 38585439 ~ 38586278 (+) True G24534
XR_002649597.1 other downstream 630761 38667509 ~ 38717435 (+) False fyn

Expression Profile