RNA id: XM_022667439.1


Basic Information

Item Value
RNA id XM_022667439.1
length 1865
RNA type mRNA
GC content 0.49
exon number 8
gene id LOC111191729
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 38359460 ~ 38379336 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ACTACATTTGTGGTTAAATTTGTACTGGTTGAACTGGTCAGGGACTGGTCAGTGTGAGCTCCTTCAGCTTCATGTAGTGTGTAGAACACAGAGCATGGTGTGTGCTGGACTCTGCCGCTGTGCAGGTGTGTGATTTGGAGACTGAAGGAGTAGTTGTAGGTGTAGTTGGTGTATTTGAGTAGTTGTAGTTTTGGTGGTGTAGTTTCTGCAGGATGGGGACTGTGAGCGAGCGCATCGTGAGCTGCTGTACCTCCACCTTCCCATGTCTGCGGCAGAAACAGCCTGAGGAGCCGCCTGTGAAACAAAATCCTAAAAAAGAAGACATTGTGGTCTTCCAAAACAAGCATGCTTTAGAACAGATGATCTCGGAGCATCCCCAGCCTGTGTCCCAGTCTAAAACCGTGTCTCAGTTCGTGGCTCTGTTTGATTACTCGAAGCGCACAGCGGAGGACCTGAGCTTCCACACAGGAGATAAACTCCAGCTGCTGCAGAAGTACGACACAGACTGGTGGTTCGTTAAAGCTCTGACCGGCGTCTCCGCCAACAAGGAGGGATACGTTCCAGCCAACTATATAGCCACTGTGGAGAGTCTGGACGCAGAACCGTGGTACTTTGCTGATACAAAGCGCTTGGATGCGGAGAAGCTACTGCAGGCAGAAGGAAATAAACATGGAGCGTTTCTCATCAGACACTGTGAAAGTCAGGCTGGAGAACTGTCCCTGTCAGTGCTTGATGGGGGTAATGTGAAACACTACAAGATCAGGCGGGAGGATAATGGTCACTACTATATATCAAAGAGCCGTCATTTCCCCACACTGAAGGAGCTGGTGGAGCACTACAGCAAGCAGGAGGATGGACTCTGCGTTCGGCTCAGACAGCCCTGCAAGAAGGCTGAAGCTCCACAGACGCACGGTCTGTCTTACAGCACAGTGGACCAATGGGAAATTCCCCGCAGTTCCATCCGACTGTTGCGGAAACTCGGTGCTGGAAAGTTTGGAGAGGTTCATGAGGGTCTGTGGAATAACACAACGTCTGTTGCTGTGAAAACTTTAAAACCAGACACTGTGGACTCTGAGGACTTCCTGCGTGAAGCTCAGATCATGAAGAAGCTCCGACACCCCAAGCTGATCCAACTGTATGCAGTGTGTACTCTGGGGGCACCGATCTACATCATCACTGAGTTAATGAGCAATGGCAGCCTGCTGGAGTACTTACAAAAAGACAGAGGGGCTCGTTTGCGTGTTCCTGATCAGATAGAGATGGCCGCCCAGGTGGCAGCAGGTATGGCTTACCTGGAGCTGCAGAATTACATCCATAGAGATCTGGCAGCCCGGAATGTTCTGGTTGGAGAGAACAACGTGTGCAAAGTGGCCGATTTTGGTCTGGCCCGAGTGTTTAATAGAGAGAATAACAACTGTTATAATGAAGATGAGGAAAACATATACGAAGCAACAGAGGGTACTTATTTTCTGGTGAAGTGGACGGCTCCCGAGGCCATTCGGGAGAACAAATTCACCATCAAATCTGATGTGTTGTCATTCGGCATCCTGCTGCACGAGATCATGACCTTCGGACAGATGCCTTATCCAACTCTCACTAATGCTCAGGTTGTTGTGAAGCTGGGTACTGGCTATCGGATGTCGTGTCCACCACTGTGTCCAaaaatgatatatgatataatggTTGAGTGCTGGAAGGAAACGCCCGCTGAGCGGCCCACCTTCGAAACTCTGCAGTGGAAACTAGAGGAATACTTCGACCTGGATGTCAGTTCATATGATGACGCTAACCGATATTGACCAATGCAGCACAGCAACAGCACTCACAAAAACTGTCTACTGTTTCTACTGTTTTCCGGCGGTATA

Function

GO:

id name namespace
GO:0018108 peptidyl-tyrosine phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004713 protein tyrosine kinase activity molecular_function

KEGG:

id description
K08892 FRK, PTK5; fyn-related kinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32876 lncRNA upstream 100211 38256201 ~ 38259249 (+) True G24437
TU32865 lncRNA upstream 113171 38243485 ~ 38246289 (+) True G24432
TU32856 lncRNA upstream 122419 38232593 ~ 38237041 (+) True G24431
TU32796 lncRNA upstream 261136 38096550 ~ 38098324 (+) False G24390
TU32762 lncRNA upstream 322712 38027773 ~ 38036748 (+) True G24359
TU32929 lncRNA downstream 61016 38440352 ~ 38440660 (+) True G24474
TU32933 lncRNA downstream 70659 38449995 ~ 38492705 (+) True G24476
TU32934 lncRNA downstream 70659 38449995 ~ 38470766 (+) False G24476
TU32945 lncRNA downstream 123891 38503227 ~ 38503518 (+) True G24485
TU33011 lncRNA downstream 202291 38581627 ~ 38582793 (+) True G24531
XM_007240826.3 mRNA upstream 9136 38344389 ~ 38350324 (+) True col10a1
XM_015603274.2 mRNA upstream 370527 37984712 ~ 37988933 (+) True LOC103045011
XM_007239970.3 mRNA upstream 384201 37969234 ~ 37975259 (+) False LOC103046026
XM_007239969.3 mRNA upstream 384201 37971638 ~ 37975259 (+) True LOC103046026
XM_022678185.1 mRNA upstream 715410 37637830 ~ 37644050 (+) False LOC111194342
XM_022667444.1 mRNA downstream 2254 38381590 ~ 38400321 (+) True LOC103029663
XM_007259909.3 mRNA downstream 37414 38416750 ~ 38427918 (+) True hs3st5
XM_007259908.3 mRNA downstream 49313 38428649 ~ 38438064 (+) True hdac2
XM_022678233.1 mRNA downstream 147242 38526578 ~ 38577159 (+) True lama4
XM_007259905.3 mRNA downstream 200627 38579963 ~ 38606640 (+) True tube1
TU32857 other upstream 122419 38232593 ~ 38237041 (+) False G24431
TU32794 other upstream 261136 38092974 ~ 38098324 (+) True G24390
TU32737 other upstream 425471 37928355 ~ 37933989 (+) True G24345
TU32543 other upstream 704582 37638438 ~ 37654878 (+) True LOC111194342
TU32264 other upstream 1920490 36432208 ~ 36438970 (+) False ar
TU33020 other downstream 206103 38585439 ~ 38586278 (+) True G24534
XR_002649597.1 other downstream 288173 38667509 ~ 38717435 (+) False fyn
TU33100 other downstream 546360 38925696 ~ 38926982 (+) True G24594
TU33085 other downstream 560021 38939357 ~ 38947222 (+) False G24583
TU33086 other downstream 560021 38939357 ~ 38947222 (+) True G24583

Expression Profile