RNA id: TU33032


Basic Information

Item Value
RNA id TU33032
length 332
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G24541
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 38617102 ~ 38617433 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

acagctctggaaaaaaataagagaccatttaaaaacgAGGAAATtagatgattacaagccatcaaagcaagctgaactgcttgaatttttgcaccaggagtggcatataattatccaaaagcagtgtgtaagacaggtggaggagaacatgccaagatgcatgaaaactgtgattaaaagccggggttatttcacattattgaacttgttttctttgcattatttaagatctgaaatctctgccccttttttgttatttcagccttttctcattttctgcaaacaaatgctctaaatgacaataatttaatttggaatttgggagaaatgtt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33022 lncRNA upstream 24575 38590941 ~ 38592527 (+) False G24535
TU33023 lncRNA upstream 24575 38590941 ~ 38592527 (+) True G24535
TU33024 lncRNA upstream 24575 38590941 ~ 38592527 (+) False G24535
TU33011 lncRNA upstream 34309 38581627 ~ 38582793 (+) True G24531
TU32945 lncRNA upstream 113584 38503227 ~ 38503518 (+) True G24485
TU33033 lncRNA downstream 53 38617486 ~ 38617866 (+) True G24542
TU33034 lncRNA downstream 2809 38620242 ~ 38620480 (+) True G24543
TU33037 lncRNA downstream 11335 38628768 ~ 38628976 (+) True G24546
TU33051 lncRNA downstream 187907 38805340 ~ 38809014 (+) False G24559
TU33055 lncRNA downstream 187907 38805340 ~ 38809014 (+) True G24559
XM_007259905.3 mRNA upstream 10462 38579963 ~ 38606640 (+) True tube1
XM_022678233.1 mRNA upstream 39943 38526578 ~ 38577159 (+) True lama4
XM_007259908.3 mRNA upstream 179038 38428649 ~ 38438064 (+) True hdac2
XM_007259909.3 mRNA upstream 189184 38416750 ~ 38427918 (+) True hs3st5
XM_022667444.1 mRNA upstream 216781 38381590 ~ 38400321 (+) True LOC103029663
XM_007259906.3 mRNA downstream 27898 38645331 ~ 38662640 (+) True LOC103028301
XM_007259901.2 mRNA downstream 50076 38667509 ~ 38717435 (+) True fyn
XM_007259902.2 mRNA downstream 50076 38667509 ~ 38717435 (+) False fyn
XM_022667246.1 mRNA downstream 50076 38667509 ~ 38717435 (+) False fyn
XM_022667313.1 mRNA downstream 104244 38721677 ~ 38726048 (+) True LOC111191700
TU33020 other upstream 30824 38585439 ~ 38586278 (+) True G24534
TU32915 other upstream 234792 38359335 ~ 38382310 (+) True G24463
TU32857 other upstream 380061 38232593 ~ 38237041 (+) False G24431
TU32794 other upstream 518778 38092974 ~ 38098324 (+) True G24390
TU32737 other upstream 683113 37928355 ~ 37933989 (+) True G24345
XR_002649597.1 other downstream 50076 38667509 ~ 38717435 (+) False fyn
TU33100 other downstream 308263 38925696 ~ 38926982 (+) True G24594
TU33085 other downstream 321924 38939357 ~ 38947222 (+) False G24583
TU33086 other downstream 321924 38939357 ~ 38947222 (+) True G24583
TU33254 other downstream 427737 39045170 ~ 39045781 (+) True G24719

Expression Profile