RNA id: TU33055


Basic Information

Item Value
RNA id TU33055
length 3630
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G24559
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 38805340 ~ 38809014 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTGACAATCAATAACTTCAAACAGGATTATTTTAATACACAGTTAAAGGTTTCTTACGTCGTCATTTGgcagtttaaaataaaacatcttcaGAGATTTAGGTAAAGTGCAAAAGGCTTATATTTCCACCAGACAGGACAAGCTGAGAGTAAACACCACACAGGGTTTAAAGCGGAGAGAGCGCTAAAGCAGATACAGAAAACGGcatgattaaaataatacacacaATAAAACAATCAAATCTCAATAAATCATAAACACACCTTCAATACATCAAACCTGACCCGTACAGGTGATTAATGTAGTGCTTTATTTTTGTCTGTAAAACGGCTGAATCAAACTGAATACATCCTTCACTAAAAAAGTGCTTATCTACCCCAAAAGCAAACTTCATAAAAACCTTGACACACAGGGAAACACCCAACAATCAAAAGAGCTTTTTAACATTCAACTACTCAAAAACCCACCCACAGGGTAGTTTAAAGGAGTTCAGCAAAAACTGtttaacatttacacacttCTCCCATCTTAAGTTAGGTGTTGTTGGTCAGCCAAGCTAAAAGTAAAGCCAATAGAGCTAAAACAAAGAAAGCTCAAGCCTCACCAATCAGCTCTTAACACTAAACACTCTCCTTAAAAAGTGTCCTTCAGAAATCTCTAATAGACTCTATGTAGTTTCTTTTACTGAATGTTTCACTGCTATCTGTAAACATAGACACAGTCAAGATGCTACAACTGTATTTAACTTTGTTCTGGCCTTCAGTTTGTTTGTAGTAGAGATACAGAGAGTCTTctaatttgttatttcagttgcACCTTAAATGGTGACCCACCAGTTTctcaataaaattaaatctcCGCCTTCAATGGTGAGCCAACTGTTTGTAGTTCAAATTTtcacttccaccttaaatggcaaaacaccaGTTTCTGATTCAAAacttcagttccaccttaaagcagcactaaaccccctgatttaaGCTGAcaccaccctcagctcaaattttaaaaaggctttaaaaaaatgggaggggtagtttgagaggggcactgggtgatgtatgggtttagaggcggggcaggagggagagctgattggctgagctgcagcagcagcagtgtgcctctgatgaGACCAGAGacagtaaaaaaagatggacgtcgtgttgccgttcccattcattcaatgaaaatgaagacaaaatctcctgccatgttggcgatcctgacacccgattctgcccagcagagaccagaggagagagaaaggctgtggagagacagcctactcattgtggggttacacagctttctgaaaccgaacagcagggggcgcccgacctgtggtggcttcacctttgagagacgatgctctgtccatcTATACACAATCTATGAGTGAGACCCAGATGACACggaaacatcatcctcgcctatagcacagttgaacctgtgagggcgctgcagagatGGAAATGACCAAGATTAATTTTAAAGATTAGAAAATGGtcatacttcttttttttaggaggactggtatgttttattacttcgaaggaacacatttcagctattaatggaaaaaatatggtttagtgcctctttaaatgGTAAGCCACCAGTTTATCGTTCAAATGTAATGTTACAGTTCCACCTTAAGTGGCGAGCCACCAGTTTCTCGTTTAAAAagccagttccaccttaaatggtgagCCACCAGTTTTTCGTTCAAaattccagttccaccttaaatggtgagCAACCGGTTTCTCATTCAAAATTTCAGTTCACCTTAAATGGTGAGCCACCAGTTTGTCGCTCAAAAttttagttccaccttaaacggtAAGCCACCTGTTTGTCGTTCACAatttcagttccaccttaaattgtgcaGCAGTTATATTCAGGAACATAAGAAACTCGTTGGGTGTGACAAGGctaaaattaaatttgaataatttttataatttttttctgtttcactttaacacagctgcagtttcaGTACAATGGTTTTCTCATCACTGTTCAGCTGCCAATGTGAAACTGTCACTCCAGGTAAGGTGGAATTGCTAGCATCACGCTAGTTGGTGAGGGGTGAGTTTTACTGCTTGTTAGCTAACTACATTAACCTCATCTTaaccctatctggacgggattactttttcagggggtcctggggtaaattcctcttttatggggggctgctctgtgattttattcccgtctggaacgaccatgtacatttttttctcagatcTCGTGACCAATAAACTCTCCTGTTTTTAATTGTAATCCAGATGCAAGATTTTTATTACTGagtgaaagtgtgaaatatttttcacagaagtcccccagagaaactaatcccatccagaagGGGCTTTACTGTATTGGCTGATCCACAACAGTCTAACTATCTCTTTAACCTTTACACCTGATTTAAGAATCACAGCAGCTGCCCAAGACTCAGcattataaatacacatttattaacATCTGTTGTTAGATGAttgtttctttacttattttgcTCATTGTCTGTGTTTTGTGGCTGTGCAGTCATCTGTCTACAAGGTTCTCAAAGTACTTGAAAACATCAGGATGATgctgaagaagaagagaagggaAATATGGCTCGAAAAGCTACAGTACAACTGGAGCAGGACAACATCATCTATGTCCAGGCAAACTTATTGACTTAATTTGTTTTACTTCAGACACTACAGGAACATCTTGATGAACTGATCTATAGAAATGATGAAATGCAAAGCCATTGAAATTGTTAAttcctataaaaaaaagttgaaataacagattttgtGATTGTTCTCTTACCAGAACAgctgatttgatttgttttacatttaattagctttttttggTCATGCAGGATCAGCAAATCAGGATCTTTAGAGAATAAACAGGTGCAGTACCTCTGAAACAAGGCAAGGGGCAGCGGTCTTGTGCTCAGTCCACACGCACAtgtgtatatacacactgcAGTGCTTAAATATTCTTTCAGGCTTGGAGCCAGACTCTGTCATACAGACGTATTTTAATTAGGGACAACCTAATTGATTATGGGATGGTTTCAGTTAGCTTTACCAGCACAGTGAGAAAATTAGCCTTAACAGATCATCAGAACTATCCATTCAGAGCCAAAACAGATCCAGTAAGATACGCCACCACTGGTTCTGACTGCTGATTGGCTAATTTTCTTAAGCTTTAGTCGTTCTTCTCCCGGTCGAGCATCAGTTTGCGCCGTGGGGAGTCAGTCAGGAAGGTGATAGTGTTGTCCGGTGCGATGAGACGGGGGCTGTCGGCTGCAGTGGTGGAGGAAGATGGAGCGCTCTGGGAGCTGAACGAAGCGTCAGGTGGAGATGTCCTGACCTTACTTGGTGAGTTAACGAGGCTCGTGTCGTCCATCTCGATCACCTCAAAGTCTGCATCGTTCCATTGGTCAGCTTCcaaatcaccaccaccaccactttCTTCCTCCGGCTCCGCCTCCTCATCATCATTGCCGGCGGAATCGAGCAATGCCTGCCGGTCGCTTTCATCTGCATCACCTCTGCCTCTGGCTCGAGGCTTCCTCAGTGCAGCGCCCCCCGCCTGGAACCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33037 lncRNA upstream 176364 38628768 ~ 38628976 (+) True G24546
TU33034 lncRNA upstream 184860 38620242 ~ 38620480 (+) True G24543
TU33033 lncRNA upstream 187474 38617486 ~ 38617866 (+) True G24542
TU33032 lncRNA upstream 187907 38617102 ~ 38617433 (+) True G24541
TU33024 lncRNA upstream 212813 38590941 ~ 38592527 (+) False G24535
TU33064 lncRNA downstream 8220 38817234 ~ 38821337 (+) True G24564
TU33076 lncRNA downstream 59720 38868734 ~ 38877657 (+) True G24575
TU33080 lncRNA downstream 74274 38883288 ~ 38884012 (+) True G24579
TU33081 lncRNA downstream 75073 38884087 ~ 38884719 (+) True G24580
TU33079 lncRNA downstream 77429 38886443 ~ 38886865 (+) True G24578
XM_007259896.2 mRNA upstream 5239 38747477 ~ 38800101 (+) True rev3l
XM_007259899.3 mRNA upstream 62756 38729312 ~ 38742584 (+) True traf3ip2
XM_022667294.1 mRNA upstream 62756 38729327 ~ 38742584 (+) False traf3ip2
XM_022667313.1 mRNA upstream 79292 38721677 ~ 38726048 (+) True LOC111191700
XM_022667246.1 mRNA upstream 87905 38667509 ~ 38717435 (+) False fyn
XM_007259888.3 mRNA downstream 119624 38928638 ~ 38933850 (+) True gjb7
XM_007259881.3 mRNA downstream 338518 39147532 ~ 39153428 (+) True LOC103047239
XM_007259879.3 mRNA downstream 346612 39155626 ~ 39171955 (+) True rars2
XM_007259875.2 mRNA downstream 405167 39214181 ~ 39222236 (+) True LOC103045608
XM_007259866.3 mRNA downstream 556793 39365807 ~ 39368293 (+) True LOC103043278
XR_002649597.1 other upstream 87905 38667509 ~ 38717435 (+) False fyn
TU33020 other upstream 219062 38585439 ~ 38586278 (+) True G24534
TU32915 other upstream 423030 38359335 ~ 38382310 (+) True G24463
TU32857 other upstream 568299 38232593 ~ 38237041 (+) False G24431
TU32794 other upstream 707016 38092974 ~ 38098324 (+) True G24390
TU33100 other downstream 116682 38925696 ~ 38926982 (+) True G24594
TU33085 other downstream 130343 38939357 ~ 38947222 (+) False G24583
TU33086 other downstream 130343 38939357 ~ 38947222 (+) True G24583
TU33254 other downstream 236156 39045170 ~ 39045781 (+) True G24719
XR_002652014.1 other downstream 516069 39325083 ~ 39340971 (+) True LOC111196173

Expression Profile