RNA id: TU33076


Basic Information

Item Value
RNA id TU33076
length 899
lncRNA type inter_gene
GC content 0.42
exon number 8
gene id G24575
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 38868734 ~ 38877657 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tacacaacaaaaaaagctgTACTCTGGTGGCCCATAAGGCCCTATAATAAGATCACAATATGTTTATGCATTTTATTCATATGTAATAAACATGTTGCtaacaatacgatatggcaaaCCCCTATGTCCCATTACCAATTTCTGACACCATGCTGATAATAAACCACCCAGCTCAATGGAAACATGCACATCACATCAGGAGCCAGTTTTGCTGCATCCCTAAGTGGTTTTTGTTTACTGAAAGCTTCttccaaataaaagaaaataattaagcTCTGTCCATTTTCAGTCTAGTCAATCACCTGTAGCTTCGCATGAAGATCTTTCCATCTGCTGCAGTGAAATGGAGAATATGCTCCAGGCCAGCTAACCGCACCGCAGGTACAACAGGACCACGGAAGAAATCTGTCAGGACATTCCGGAGACGTGAATATTCATTATCCACATCAAAAAGCTCCCCAGCAAATATCAGCATTGGTTTAGTGCCCTCTGCACACTTTTCATTCTTGATGTTTTTCAGAGCAGTGAACTTCTCGATGCCCATCTCAAACATGTCCAGCACATGAAaatcaaacattcgacCGAATACGAGGTTATTGGGTCGTTTCTTGTTGTGCGagccaaataaaaaaagggaGCAGTCTGTTTTTTTGGAGAAGAATTCCAGTGATGTGGAGTCCTCAAAAGGCCTCATAATGTTTTTCTTTTTGTACAGCACAACATTTGGTTTCTTTAATGAATATATGTCTTTCAGGGCCTGAGTTACTGTTTCACTTGTGTTCCCTCCTTTCATAATCATCGCATTCTTCGAGTTTTCCAACAGCTTCGGTGCTCTGTGGTCCAGGAAGCGTTTGGACCGCTTTGTCTTCGGCTTTACCACTCCGTCCAGATGCGCCATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33064 lncRNA upstream 47397 38817234 ~ 38821337 (+) True G24564
TU33051 lncRNA upstream 59720 38805340 ~ 38809014 (+) False G24559
TU33055 lncRNA upstream 59720 38805340 ~ 38809014 (+) True G24559
TU33037 lncRNA upstream 239758 38628768 ~ 38628976 (+) True G24546
TU33034 lncRNA upstream 248254 38620242 ~ 38620480 (+) True G24543
TU33080 lncRNA downstream 5631 38883288 ~ 38884012 (+) True G24579
TU33081 lncRNA downstream 6430 38884087 ~ 38884719 (+) True G24580
TU33079 lncRNA downstream 8786 38886443 ~ 38886865 (+) True G24578
TU33094 lncRNA downstream 23329 38900986 ~ 38901366 (+) True G24589
TU33273 lncRNA downstream 253625 39131282 ~ 39139754 (+) True G24735
XM_007259896.2 mRNA upstream 68633 38747477 ~ 38800101 (+) True rev3l
XM_007259899.3 mRNA upstream 126150 38729312 ~ 38742584 (+) True traf3ip2
XM_022667294.1 mRNA upstream 126150 38729327 ~ 38742584 (+) False traf3ip2
XM_022667313.1 mRNA upstream 142686 38721677 ~ 38726048 (+) True LOC111191700
XM_022667246.1 mRNA upstream 151299 38667509 ~ 38717435 (+) False fyn
XM_007259888.3 mRNA downstream 50981 38928638 ~ 38933850 (+) True gjb7
XM_007259881.3 mRNA downstream 269875 39147532 ~ 39153428 (+) True LOC103047239
XM_007259879.3 mRNA downstream 277969 39155626 ~ 39171955 (+) True rars2
XM_007259875.2 mRNA downstream 336524 39214181 ~ 39222236 (+) True LOC103045608
XM_007259866.3 mRNA downstream 488150 39365807 ~ 39368293 (+) True LOC103043278
XR_002649597.1 other upstream 151299 38667509 ~ 38717435 (+) False fyn
TU33020 other upstream 282456 38585439 ~ 38586278 (+) True G24534
TU32915 other upstream 486424 38359335 ~ 38382310 (+) True G24463
TU32857 other upstream 631693 38232593 ~ 38237041 (+) False G24431
TU32794 other upstream 770410 38092974 ~ 38098324 (+) True G24390
TU33100 other downstream 48039 38925696 ~ 38926982 (+) True G24594
TU33085 other downstream 61700 38939357 ~ 38947222 (+) False G24583
TU33086 other downstream 61700 38939357 ~ 38947222 (+) True G24583
TU33254 other downstream 167513 39045170 ~ 39045781 (+) True G24719
XR_002652014.1 other downstream 447426 39325083 ~ 39340971 (+) True LOC111196173

Expression Profile