RNA id: TU33079


Basic Information

Item Value
RNA id TU33079
length 423
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G24578
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 38886443 ~ 38886865 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gttgtggacggtggagtgggtggatgctggtgtttcagggtgcctccatgtctatgttaccttctggctctctgcctttagttaggctgttttattcagttctgccggagtcattagccacactctgataatgttttaatattctcagttttgcataaatccagtcaaaactaattccatctctctgctttcctccgagttactgactgcccacctgtctgacccgataccgatgttggaccctcaggctctcgcgtctcctgtccggccagactgatggaagtttctgaagtcagctcttctccaccaccaccacagatcagctgctcatcgaccatcttactctccactacagattacatccaagccattagtggcgctattacactcctgagtacataaaacctatatggatgtataaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33081 lncRNA upstream 1724 38884087 ~ 38884719 (+) True G24580
TU33080 lncRNA upstream 2431 38883288 ~ 38884012 (+) True G24579
TU33076 lncRNA upstream 8786 38868734 ~ 38877657 (+) True G24575
TU33064 lncRNA upstream 65106 38817234 ~ 38821337 (+) True G24564
TU33051 lncRNA upstream 77429 38805340 ~ 38809014 (+) False G24559
TU33094 lncRNA downstream 14121 38900986 ~ 38901366 (+) True G24589
TU33273 lncRNA downstream 244417 39131282 ~ 39139754 (+) True G24735
TU33277 lncRNA downstream 252430 39139295 ~ 39144818 (+) False G24735
TU33282 lncRNA downstream 286972 39173837 ~ 39175538 (+) False G24739
TU33285 lncRNA downstream 287110 39173975 ~ 39180117 (+) True G24739
XM_007259896.2 mRNA upstream 86342 38747477 ~ 38800101 (+) True rev3l
XM_007259899.3 mRNA upstream 143859 38729312 ~ 38742584 (+) True traf3ip2
XM_022667294.1 mRNA upstream 143859 38729327 ~ 38742584 (+) False traf3ip2
XM_022667313.1 mRNA upstream 160395 38721677 ~ 38726048 (+) True LOC111191700
XM_022667246.1 mRNA upstream 169008 38667509 ~ 38717435 (+) False fyn
XM_007259888.3 mRNA downstream 41773 38928638 ~ 38933850 (+) True gjb7
XM_007259881.3 mRNA downstream 260667 39147532 ~ 39153428 (+) True LOC103047239
XM_007259879.3 mRNA downstream 268761 39155626 ~ 39171955 (+) True rars2
XM_007259875.2 mRNA downstream 327316 39214181 ~ 39222236 (+) True LOC103045608
XM_007259866.3 mRNA downstream 478942 39365807 ~ 39368293 (+) True LOC103043278
XR_002649597.1 other upstream 169008 38667509 ~ 38717435 (+) False fyn
TU33020 other upstream 300165 38585439 ~ 38586278 (+) True G24534
TU32915 other upstream 504133 38359335 ~ 38382310 (+) True G24463
TU32857 other upstream 649402 38232593 ~ 38237041 (+) False G24431
TU32794 other upstream 788119 38092974 ~ 38098324 (+) True G24390
TU33100 other downstream 38831 38925696 ~ 38926982 (+) True G24594
TU33085 other downstream 52492 38939357 ~ 38947222 (+) False G24583
TU33086 other downstream 52492 38939357 ~ 38947222 (+) True G24583
TU33254 other downstream 158305 39045170 ~ 39045781 (+) True G24719
XR_002652014.1 other downstream 438218 39325083 ~ 39340971 (+) True LOC111196173

Expression Profile