RNA id: TU33080


Basic Information

Item Value
RNA id TU33080
length 537
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G24579
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 38883288 ~ 38884012 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

caggctttccttaaagtagaagactagtactcttcagatcatgtgtatttgttctggcccaagatgaaaaagtccttcaaaatcacactagaacatcagctttacataaaaaattgtgcttcatggatcggtattccatgttgccagttcattttaaagtataaaatcagcttgggccaggctatttccaggttttccttaaagtagaagactagttctcttcagatcatgtgtatttggcctggcccaagatgaaaaagtccttcaaaatcacactagaacatcagctttatattcaatttttttgtgcattatggatcggtatgctatgttgccagctcattttaaagtataaaatcagctcgggccaggctaattccaggttttccttaaagtagaagactagtactcttcagatcatgtgtatttggtctggcccaagatgaaatagtctttcaaaatcacactagaacatcagctttacataaaaaaaactgtgcattatggatcggtatgctatgttgccagttaatttta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33076 lncRNA upstream 5631 38868734 ~ 38877657 (+) True G24575
TU33064 lncRNA upstream 61951 38817234 ~ 38821337 (+) True G24564
TU33051 lncRNA upstream 74274 38805340 ~ 38809014 (+) False G24559
TU33055 lncRNA upstream 74274 38805340 ~ 38809014 (+) True G24559
TU33037 lncRNA upstream 254312 38628768 ~ 38628976 (+) True G24546
TU33081 lncRNA downstream 75 38884087 ~ 38884719 (+) True G24580
TU33079 lncRNA downstream 2431 38886443 ~ 38886865 (+) True G24578
TU33094 lncRNA downstream 16974 38900986 ~ 38901366 (+) True G24589
TU33273 lncRNA downstream 247270 39131282 ~ 39139754 (+) True G24735
TU33277 lncRNA downstream 255283 39139295 ~ 39144818 (+) False G24735
XM_007259896.2 mRNA upstream 83187 38747477 ~ 38800101 (+) True rev3l
XM_007259899.3 mRNA upstream 140704 38729312 ~ 38742584 (+) True traf3ip2
XM_022667294.1 mRNA upstream 140704 38729327 ~ 38742584 (+) False traf3ip2
XM_022667313.1 mRNA upstream 157240 38721677 ~ 38726048 (+) True LOC111191700
XM_022667246.1 mRNA upstream 165853 38667509 ~ 38717435 (+) False fyn
XM_007259888.3 mRNA downstream 44626 38928638 ~ 38933850 (+) True gjb7
XM_007259881.3 mRNA downstream 263520 39147532 ~ 39153428 (+) True LOC103047239
XM_007259879.3 mRNA downstream 271614 39155626 ~ 39171955 (+) True rars2
XM_007259875.2 mRNA downstream 330169 39214181 ~ 39222236 (+) True LOC103045608
XM_007259866.3 mRNA downstream 481795 39365807 ~ 39368293 (+) True LOC103043278
XR_002649597.1 other upstream 165853 38667509 ~ 38717435 (+) False fyn
TU33020 other upstream 297010 38585439 ~ 38586278 (+) True G24534
TU32915 other upstream 500978 38359335 ~ 38382310 (+) True G24463
TU32857 other upstream 646247 38232593 ~ 38237041 (+) False G24431
TU32794 other upstream 784964 38092974 ~ 38098324 (+) True G24390
TU33100 other downstream 41684 38925696 ~ 38926982 (+) True G24594
TU33085 other downstream 55345 38939357 ~ 38947222 (+) False G24583
TU33086 other downstream 55345 38939357 ~ 38947222 (+) True G24583
TU33254 other downstream 161158 39045170 ~ 39045781 (+) True G24719
XR_002652014.1 other downstream 441071 39325083 ~ 39340971 (+) True LOC111196173

Expression Profile