RNA id: TU33086


Basic Information

Item Value
RNA id TU33086
length 7830
RNA type TUCP
GC content 0.51
exon number 2
gene id G24583
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 38939357 ~ 38947222 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCTTCTATTCAAACAGATAAATAAGGACAACAACGCAGATGTACAAAAGGCAAGCTGTAATAAATTGGTCTCAGTTGTTTAAGGTACACACTGCTGGTGGCAGTAATTATACAGAGAACCGTTATGTGCACACAGACAACATTATAGACGATTTCAAATTTACAATGCAAGTTCAACGAGACCAAAACAGTTATCatctacacactgcactacagAATTTCCAATCCAACTGGAACAGGGGCTATTTCACTTTCAAAGTAAATAGAGTCCTgtagaaaattaaaaagtaaaacctTTGTTGTTCCTTTACAAGTTCATCTCCAAAGGCAACAATATGTGTAGCTTTATAAGGGCATGCTTCAGAGGTATATAATTATCTGCTGTTTTAGTCATCAGCTATAAAATGAGTTTAATACACACAGTTCTCTTCAGTGATTAGCGAGTGTCTATTAATATCAAGGGCATGTACTGtttcacaaacaaaaaaaacaaagaaaaaaaaaaaaacattccagcAATTTGTTCGACAAACACTACTCAATCAGTACATTTATTGTCCAAATACAGATTCCATCTCACTTTTGAACCATTTCATGCCCCCGTGTGCCGTCCCTTAACTTTTATCAGCAGATGACTCCTCTTTTTGAATTACCACAGCAGGGCGCATTTCATGCAGCTGTTTGAGCAACAGTTCAAATACACTTGAAAAACTTCGGTGCACCTCAAACTTCACGTTACTAAGACAGGTTAGCTTTTGAGGGTTTTTGAACTCAACAAGTTTCAGTACATCAGACCTACTGCACACAACTGAGGCAGTCTTTAACTGGAAAGTAGGGTGTCTCTTGTACATGTTGGCGTCCAAGGTCACTGAAGCTTTCCTCTTTCCTAATGGCTGTCTAGACTGCTCCAGGAACTGAAGGAAAGACACCTCAAAGCCCAGTGGCTTAAAAGTGCTCATCTTAGAACCCTCACAGGCTTCTTCTTGCGCCAGTGTGGCGCTGGACGACGTGGAGTCAGAGTTGATGTCGGCATAGTTAACAGAATAACTGTGCGCGGTTCTTAACCTCGTCACTCTCTTGTGAGTAATCGGCTTGTTTCTGTTATGCGCCAACTTGCGTGGACGTCCTCTTTTGCGCTTGACCACCACAGAGATATCGGAGCTCGCGTCAGTGGAAGGCTTGCTGTCTGAAACATATGCGTCTTCTGTGCTCTCCTTTTCTGAAGTCAGCTTTGAAAACTCAGACTCCCTAGGCGCTTTGTTTGAAGGCTTCTCGTTCTCTGACGTCTCGACAGAGCTTTCCTCTGACTTATCTGTATCGTCACTCCTCGCGGTTATGCGCTTGTACTTTGAGCGGGGCAATTTCTTGCAGTGAATGTAGTTGCTCCTTTGCTCCTCCAAATACTGTTTTGGCAGGCCATGCTGGAcgtaatgttttattatatttctttcAGAGCTAGCCACTGTTTCGCAGCCTTTGATCATGCAGGGGTACTGCAACGGAAACCTCTTTGTGCACACGGCAGAGGCCTCCTccttagtttttaaaataggttttccatattttgtccagtggttgttctttttttcttttctcttcttatctAGCCCCTTCTTTTCAAGTTTCCTGTTAATTTCTCTATTTTCCTTCTCAAGGAAAGGATAAGGGTTCTTTCGAGGACGACCAAGTTTGACACCTTTCGAGTTCATCAGCTGGAGTTTGTAAATATCCTGGTGTTTTTTCATGGTGTGCCGCAGTAGATTTGACCGTGTTGAGTAAGCGCAGTCGCAACCCTCGACGTCACAGTGGAACAGTCCCTCTACAGCCTCTACTTTAGAGACCTTAGCATCCTTATGTTCTTTGTCAATGTGGCCAATATACTTCCAGAATGCTGTAAAGGTAACTGTACAATTTGGCTGGTCACACTGAAAcctgcccaaatttatgcaagACATCATAGCACCCGCTGAGTCCAGGCTCAGCTTGTGGAGCTGCAAATAATGTTGCAGCAGGTCTGTAACCACCTGGAATATTCTCGAGCAGTCTTTGACTTGACACCGAAGCTCTTCCACTTCAGCTACTTCACCGTCAGGTAGGTCATGATCCTCCTCGTTTTCGTTAGTCTCTTCATCTTcgtcattttcttcttcttcgtcgTCGTCATTATTGACTTCAAATTTAGGAAGGTCAGGCTGATGTACAGCTTTGTAATGGAGAATCAAATTTTGCTGGATAGTGAAAGCAGCAACGCAGCCTTGATGAACACAACGATAAGGCCTGTAGGGGCTAAAAACATCATCTGGGTCCGTTTTCTTCTCTTTAGGCTTTTTGGGTATTTCCCTTGGTTTTGGTGGTCGAGGTTTTACCAGTTTAGCTTGTTTGTCTTGGGACAGAGTACCTGGCGAGGCAATCAGTGCTGTAGTCTGGGCCTCTAGGGGTGCACCTGCGGGTGCACCTGTATGCAGAAATCCTCCAGATGGAGTCTGATGGAGGTTCTGGCTAGGTGCAAATGGTCTTGGCACGAACTGCCCATTTAACTGTTGCTCCATGCTTGAGGCAGTCATCAAGGAAGGACCAGACTTTATCACTGATGGATAAATGGCTGTCTTACTACTGGATGGGGCTGAGTGCATAGTCCCTGGGAGATTACGGTTCAATGGAGTAACGCAAGGTTGCCTTACAAAAGTCTGGTGACCGAATTCAGATTTAATTCCTTCATTAGCAATCACAAGGCCTTTCTGGCCAGTACCATCAATGTGTTTCTGTTGCCCAATATTAGAGGTTCTCTGTTGTACTGGACCATCATTTGAACCAAGCAAATCTGTGATGTTTGGTGTGGGACAAGGACTACCTTCACCCTCCAATAATCCTCGacattgttgctgctgctgctgctgttgcttctTTCTTATCTCCATGATCTGCTCTTGTGAAAAACTGTGAACACTTTGATAATGGACTCTCAGGTTTGAGTTTCGCGTGAAATTTTTGTTACATACTTGACAAATAAAAGGAGCTAACTTAACCTGGTCTTTCCTGTACTGACTGAGCATGTCTTTAGTGTAGTTATGGAGTTTGCTGAGATGTTTAAACATGGCATCCTTTGTCATAGCTCTGTAACCACAACTACTGGTGTCACAAAGGTAGCCAGGTCTCTCGACAGTGGGGTTCATGGCATCTGTGGAGCTCATACTATCTGTGGAGTTTACAACATCTCTGGGATTCATAACATCTCTGGGATCTCTGGGATTCATAGGATCTCTGGGATTCATAGGATCTCTGGGATTCATAGGATCTCTGGGATTCATAGGATCTCTGGGATTCATAGGATCTCTGGGATTCATACGATCTCTGGGATTCATAACATCTCTGGGATCTCTGGGATTCATAACATCTCTGGGATCTCTGGGATTCATAGGATCTCTGGGATTCATAACATCTCCCGGATCTCTGGAATTCATAACATCTCTGGGATTCATAACATCTCCGGGATCTCTGGGATTCATTGCATCTGTGGTTTTAGGTAATCCAGATGTTTCTGAAGGTCTACTAATGACCATTTCCTGTTCAGGGACTTCTCTATCCAAATTCAATCTTTCAAGTGCTTTCTGAATTTCTGTCACTTCATGATCTTGCTGTATAACTGAATTAGGGGATACAGCATCATCGATGCTGTCTGTAGAAACAGATGCCGCAGAGATTTGTGCTTGGCCTTCAGCTGCTGTAACAGTCCTAGTTTGCTCAGAGAAAGGTTTATTTTCAAAATGATGGTCACTCTGAGGAACCTTTTGGATCACAGGAGTTGCTTGCTGAGGAACGCCCATTGCAGGACTTGAGGCAGCTGAGCTCTGAAAACTTCCACTGTCAGCACTGTTGACTGTGCACTGTTGACCTGGACACACACTACTTTTCTTGTGGAAATCTCCAGCTAGTATCTGCTCTCTAAGTTTTTCCTTGACACTCTTTTCAGACACCAAATTTTGAGCAAGACTAGCCATGGCAGCCAGAAGACCATCATTAGATAACCCACTTGTGTTCATATTGGTAGATCTGTCTGTGAGCTCCTTCATTTTGTTAAGAGTTTCATTGTGAAGAATTTTGTCAATTTGGTCAGTGGGAGCTCTGTTACAAGAGGCAGAAGAAATATCTTCATCCATCAAACGAGAAAGAAGGGGGTCTGAAAGGTTGCTGTCAGAATACAAGGGATTGCAGGGCTGTGTATATTTCATCTGATGCTGACTaatattttctttgattttcccagTGTGTTGAATCACACTGCTTTGCCCATCTTGAGGGTAAGGGACAGATGCATTGGTAAATGTCTGCTGTCCAACTCCAACAGACTCGCACAGATTGGAGGAAATTTGTTTGATGACCTCAGTGTTGGGCTTACCACTGCTAGCATATGGGGAATCCTTACCATGCAGGAAAGTGACATTGGGGAATAGTTTTGGATCAAGTGGACCTTTGCTGACTGCATGAAATGGCTGGCTGGAGTTTAGATGTCCAGATGGACTGGGCTGAGGTGTGGTCACAGGAGAGTTCAGCAGATCAAGAAATGAGATGGGCAGGTCTGCACTCAAGTCCGTATCATCAAAGCCTTTGCAGTGAGAACGTTTAGATAAATGTCCACCAAGAGATTTAGGACTCTGGAATTCTCTAAAGCACCTACAGCAAATGAACTTCCCATCTCTGATGATGGCAGGCCACTTtgttcttctgcttcttttgaCTTTTTTAATGTCGCCACCATTTGTGGAACTGACACCACCACTATCTTGAGAATTGGACAGAGCTGAAGAGGTGCTTCCTTGGGAACACTCTGGAGGTGATAAAGTTCTCTCCAGTTTCACCACAGACTCAGGATGTTTGACAAAAGGTACAGGATTGCTCTTGGATGGCATAGTATAGGAAGATGCAGGTGAATTGCCGTGGTGACCCTTTACAGCTGGATTGTTGAGCCTTTGGGTAAAGTCTGTTTGTGGTGGGACAAATGTACATGGGGCATTACTTTGAATCTGCACCGAAGGGTAGGCAATTCCTTGCCTCTGACTATCTGAACCTTGGCCTTGTGCAACAATATTCATGTGAGGGGTAAGGTGGCCACTTGCAGGGACATTAACATTTGCATTCACGGCTTGGGATTGGCCAGTCCGCTGTTGACCCGAATTGTTGACAGAGACAGAATTCCATGAAGGGTCAAGCGCAATATGAGACTCACTTGCAGTGTGTCCCAACTGTGAAAGCACAATGGGATCCAATATACTCTCCATTTGATTGGGGAAAGGCTGGCTAGTGGAGGCCGGCAGGTGGGAAGAGGTAGAGGGATAACTGGGTTTTGGGCAGCTTGCTGAGTAAGCATTGTGGCAAGTCAGGTTTTGCACTTGTGCTGTTTGAGCAGGAATTCTTGGACCCAACTTGTTCTGCAAGGATGCAGCTGAATTAGGATTGCCATTTAGTGACGCAGATTTGTTTGCGATTTGTTGCGCCCTGTTATTCTTTCTGTCTAGCTTCCACTGGGTGTAAAACTCTGGGTGAAGTGCCTTCATGTGCTTGGTTAGGCTTCTGAAGGAACAATATTCCCGAGAACAATTTTCAAAAGCACACTTgaatttctctttctcctcctctgctGGTCCAGTGCTATTTGTGTGCACTGGTTGAGCTGGACTACTTTTAGAAACCTGCATGTTGGTGGGAAAAGAAGCGACTTGTGGAGGAAGCTTCTGAGGCACTGGAATCACTGGGGTACTACTGTGGGTAGTGTGTGCTAGGGATGCCATGCTATTTCTAAACGGGACTTGATACGGTGTCTGAACATGGGCCACAGGACTGGGACTATATTGTTCATATTCAGTGTTTGCACTGTTGTACAGTGTTGGAGGCCGGGTGTGCGACACAGAATTTGTTGTCTGCATTTGACCCTGCAAAACATCACTTGAGGGGGGTGGCTGAAAGTCCTCTAGAATGTTCTGATAGGAGGATGTTTGGGGAACTGGGCAAGATGAAGCTAGGACTGGGTCATTCATCAATACGTCCAGCAAGGACTCCTCTGGTCTGGATTCAGTCAAATGAGACATGGCAGGGTTGACAGGAGGCTGAATCAGCTGGGTCTCCATGTTGTTCATGGTCTGTTGTTCATTAAGATCTGGGTCGGGTGGTTCAGATTTGAGTGTTCCAGGGTCAAATGCTTGAGTGGCTTCTGGACCAGCACTGCTGAGCATGCTTTCAATGGAGTGCTTGACTTTCACCATGTTGGCCATCTGACTTGAAGGGCTCAACGCACAACTGGAGTTTAACAGGGGATCCGCAAAGGTGTCAAGCTGGTCAGCAGCCTCAGCTGGTGAACTGGTCTGGTCAGGACGAGGTTCAAAAGAAGCAACTTGGCTCTCGGGATCATGTACTTCTTCTTTCTTAGCGTTATGGCTCTCTTCGTGCATATCTAACTTAGACTGAGAATGAAACACTTTACCACAGTCAGGCACTTTGCACGTAAACGTTTTATAATGTTGCGCCTCGTGGTCGTAGAGTTTAAAAGCCTCGCTGAAAACTGTTCCACAGCCAGGAAACATGCACTTTGCCTTGAACACCGGATGATTTTTTCTGTGCACAAGAAGCTCAGCATTAGAGTCAAAGCTAGCTTTGCAATTCACCTGAATGCAAATATAAGGCTTAGCGCCACAATGGACCTGAAGATGATCATTGAGGTGACTGACATTAAGAAAGTGACGCCGGCAATATTGGCAAACTATCTTTGTGTTCTGCATTTCAAGAAATCGTTTAGCTTCTTCAACGTCCCCGTGATCCTTCACATGGGCAATAAGATTCCGAAAGTACTTGAACCCCCTCCTGCAATTTGGGACAGGGCAAATGTTGCCACCTTTCCCATCTGCTCCAGCACCATCCTTCTGAGAGCCCATCCCATCTCCATTGTAGAATCCATCAAAGTCTCCATTTAAGTTTTTCGGTTTGGTCTTTCGAGACAGATTGTCTCCGCTTTTGCCATTCAATGCAGAAATGGCTGGGATGGCAAGTTTTTCATTTGCCAGTTTCTTAGTGGTTTTCATCGCTGCAAGACGTTCTTTGCAAGACATCTTTACATGCGACGCAACGTGTGGGTCTAGAGTTTCTCTCGTTTCAAAAGTCTGTACACATATTGGACAGGTATAACATCCATCTTTGAAGTGAGTCTGTGCGTGACGCACTATTCTGTGACCGAGAAATTCCTTgtcacacaaaacacaatattGCATGTAAGCTTGCCAATTTCTAAACCTAGCCGATACAAACCCTTTCTCCCTTAGCTTCTtaatttctctatttttctgctTCTGGTCTTCGATTTCCTTAAGTTCATTTGTAGCATCCAGAAAGTACTCGGAAACATCCTTGAACTCCTGAGGCAAGCCTGAATCATCCAGAGCATCTGGATGATCATCGTTCAGCTCATCAATGGAGGACACGATAGATGCCTCCTCACCCATTAGACCTAAGCAATGTCGCTTTAGTGTCTTCCAGTCCCAGAACTCGGGGTCAAACGGCCACTGGGTTTTGAAAACGAGGAGAAGTTCACAACGTAGAGAAGTGGGTATTGGAAGGCTCTCCTCCTCAACCTTCTGATCTGGTTCATTATAGAGCGTTTCCACAGCATAATATGAGTCAACTGTTGGCTCCAGAAGAAACTCAGTCAACTGACAAGCTCGTTTCACTTCCAGGTCATCAGGCAGCAGGCATGAGATGGTTTTGCAGACGGTGGCCTTGTTGGTTCCTTCGCAGGACTCCATTCGGAGAGCGCTCACACACATCTCTATGCAGGCCGGCAATCCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33094 lncRNA upstream 37991 38900986 ~ 38901366 (+) True G24589
TU33079 lncRNA upstream 52492 38886443 ~ 38886865 (+) True G24578
TU33081 lncRNA upstream 54638 38884087 ~ 38884719 (+) True G24580
TU33080 lncRNA upstream 55345 38883288 ~ 38884012 (+) True G24579
TU33076 lncRNA upstream 61700 38868734 ~ 38877657 (+) True G24575
TU33273 lncRNA downstream 184060 39131282 ~ 39139754 (+) True G24735
TU33277 lncRNA downstream 192073 39139295 ~ 39144818 (+) False G24735
TU33282 lncRNA downstream 226615 39173837 ~ 39175538 (+) False G24739
TU33285 lncRNA downstream 226753 39173975 ~ 39180117 (+) True G24739
TU33289 lncRNA downstream 237304 39184526 ~ 39192171 (+) True G24742
XM_007259888.3 mRNA upstream 5507 38928638 ~ 38933850 (+) True gjb7
XM_007259896.2 mRNA upstream 139256 38747477 ~ 38800101 (+) True rev3l
XM_007259899.3 mRNA upstream 196773 38729312 ~ 38742584 (+) True traf3ip2
XM_022667294.1 mRNA upstream 196773 38729327 ~ 38742584 (+) False traf3ip2
XM_022667313.1 mRNA upstream 213309 38721677 ~ 38726048 (+) True LOC111191700
XM_007259881.3 mRNA downstream 200310 39147532 ~ 39153428 (+) True LOC103047239
XM_007259879.3 mRNA downstream 208404 39155626 ~ 39171955 (+) True rars2
XM_007259875.2 mRNA downstream 266959 39214181 ~ 39222236 (+) True LOC103045608
XM_007259866.3 mRNA downstream 418585 39365807 ~ 39368293 (+) True LOC103043278
XM_022685382.1 mRNA downstream 441645 39388867 ~ 39397878 (+) True eif2b2
TU33100 other upstream 12375 38925696 ~ 38926982 (+) True G24594
XR_002649597.1 other upstream 221922 38667509 ~ 38717435 (+) False fyn
TU33020 other upstream 353079 38585439 ~ 38586278 (+) True G24534
TU32915 other upstream 557047 38359335 ~ 38382310 (+) True G24463
TU32857 other upstream 702316 38232593 ~ 38237041 (+) False G24431
TU33254 other downstream 97948 39045170 ~ 39045781 (+) True G24719
XR_002652014.1 other downstream 377861 39325083 ~ 39340971 (+) True LOC111196173
TU33356 other downstream 446620 39393842 ~ 39397829 (+) False eif2b2
TU33591 other downstream 872054 39819276 ~ 39825718 (+) True G24972
TU34411 other downstream 3444418 42391640 ~ 42392938 (+) True G25601

Expression Profile