RNA id: TU33249


Basic Information

Item Value
RNA id TU33249
length 438
lncRNA type intronic
GC content 0.42
exon number 2
gene id G24716
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 38959682 ~ 38962053 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

cactgctcggattacattataaacgcgctgctaacctcaggatgtttataactacggagtttagtggacacaccacggctgcaaggttagactgttgaaggctactgaagactactaaagcaggcaacgcagcgtaagcaaaaaaaaacaaaaaccacacacacacaccaaaatacaagttaagataaaatatgaaaacgaacataataaagcataaataattaaattgaattgcgggccagatgtatgtttattttgttaacccgtgaggggccgtatgaaaccgcgtgggccggtactttgagacccctggtgtaatgtaaaggtgtaatagtgttgagggaaggtataatattgttaagggaaggtgtaatagtgttgagggaaggtgtaatgttaaaggtgtaatagtgttgagggaaggtgtaatgttaaagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33219 lncRNA downstream 60032 38900985 ~ 38901374 (-) False LOC103024598
TU33228 lncRNA downstream 74264 38886933 ~ 38887142 (-) True G24698
TU33227 lncRNA downstream 74540 38886447 ~ 38886866 (-) True G24697
TU33213 lncRNA downstream 76797 38884088 ~ 38884609 (-) True G24688
TU33224 lncRNA downstream 78241 38882899 ~ 38883165 (-) True G24694
TU33426 lncRNA upstream 86704 39048757 ~ 39048957 (-) True G24841
TU33427 lncRNA upstream 95514 39057567 ~ 39057901 (-) True G24842
TU33428 lncRNA upstream 95952 39058005 ~ 39058566 (-) True G24843
TU33424 lncRNA upstream 185506 39147559 ~ 39153451 (-) True G24839
TU33456 lncRNA upstream 225729 39187782 ~ 39188278 (-) True G24860
XM_022685243.1 mRNA downstream 7961 38939398 ~ 38953445 (-) False znf292
XM_022685229.1 mRNA downstream 7961 38939398 ~ 38953445 (-) False znf292
XM_022685223.1 mRNA downstream 7961 38939398 ~ 38953445 (-) False znf292
XM_022685231.1 mRNA downstream 7962 38939398 ~ 38953444 (-) False znf292
XM_022685235.1 mRNA downstream 7962 38939398 ~ 38953444 (-) False znf292
XM_015608507.2 mRNA upstream 137373 39099426 ~ 39128033 (-) False bub1
XM_007259887.3 mRNA upstream 137373 39099426 ~ 39128032 (-) False bub1
XM_015608508.2 mRNA upstream 137373 39099426 ~ 39128032 (-) False bub1
XM_007259886.3 mRNA upstream 137373 39099426 ~ 39128032 (-) False bub1
XM_007259885.3 mRNA upstream 137373 39099426 ~ 39128032 (-) True bub1
TU33229 other downstream 34494 38925696 ~ 38926912 (-) False smim8
TU33230 other downstream 34494 38925696 ~ 38926912 (-) False smim8
TU32960 other downstream 683814 38275472 ~ 38277592 (-) False ndufaf4
TU32826 other downstream 1017060 37938829 ~ 37944346 (-) False fam76b
TU33468 other upstream 311582 39273635 ~ 39346869 (-) False LOC103043888
TU33473 other upstream 347677 39309730 ~ 39324690 (-) False batf
TU33467 other upstream 376973 39339026 ~ 39346869 (-) False LOC103043888
TU33469 other upstream 376973 39339026 ~ 39346869 (-) True LOC103043888
TU33508 other upstream 493183 39455236 ~ 39458189 (-) True G24903

Expression Profile