RNA id: TU33285


Basic Information

Item Value
RNA id TU33285
length 1899
lncRNA type inter_gene
GC content 0.39
exon number 5
gene id G24739
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 39173837 ~ 39180117 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TAATTAAGCCTTTTCTTAATAAGatggtttatttatatatttaaataatccacacaaaaacagtgattttgtaaaaagaaaaaaaaaaaagtagtcagAGATCTAGGATCTTGTAAAATACTGTTTGTATTCATGGCTGGACTTTTTCACATGTAGAACACATTCTTGTAAACAAACATATAATGTAGTGTGCAAAAATCATATCAAGCCAGATTCATAGTGAACACTATCAATCCTAAACATGAACAGTAAGGCTTTGTTTTTACAGGCTGTTCCTCACAAATCTCATATGCTGCTGATTATTTTACGATATGAACTGAATGTAAGGAGCAAGGCAATCTGCACACTGTGCACAAAACCAAAACAGACAGGAAGACAGAGGCATGCAAAGTGCTGACAAACACTACAAATAGTCAACTATCAGGAAACTGAAACCTAAAACTGAAAAAGTCTATTCTTGCTGCATTCAGTTGTGTGTTATGTATGGCGACATAACAGTGGATGACGGTGGATATCATGAGTACAGTAGATGAATATGTAAAAACATGAACAGGATTGACTACTTCCATCAGCATTATTATCTTActgaatgttgtctgttttgtttGGCCTGTGTGTGGGTGCTATGCGTTCttttacaaatttaaatatttgaggGTGGATTGACGCACCCAGCATATTCAGCAGCACTCTTTTGTCTTTTGATTCTAACACCCATGCACTGATTCAGTCATCTGATAAAGCGATTGTGTCATACATCACATGATACTGATCACATCCAGAGGAGAACCTGTTCTGCATGTTTGGCCCCCTGTTTGACAAACAGTCCGTTTTGTCCTCCAGGATCCAGTGAATCATCACAAAACTTGAAAACCGTAAAATATTTATGCTCATATCCAAGCATGATAAACCCACGAACGAATGTAGCCTTGCTATGTTGATTGAGACTGACAATTAATTAAAGGGATAATCCAGCATTTTTCAGACTGCTCTCCTGTGTAGCTGCTATAGATATCCTGTTAATCAATTATCAGAGCATTTTCATAGTCACGGCAAGTTCGGTTTGGGCAATATGAATATTAAGCTGAGAAATGCTGAAGTATTCCCGTaattattagaaataaaaattcgAAATTTAAAAGCAGAAGGTGATCTCCGGCtgagaaaacataaaaactgaACGTGGTCTTCTTCTCTTCTGTAGCAAAAAGCCGTCCCTATAGAAATGAATGGAACATCTTTATGTTTCCCCGGTGGGGTCAGTACACACAGGACAAACCAAGCAGTGCTTATTCTACaaatccagtaaaaaaaaaagaagaaaaaaaaaggaaaaagaaatgtGGAATCTTTGTCCTAAAAATCCCACTGTCTCTGTATTTTTGGCTGCTCACACTGAAATGAGCTTGTCTTTGGCGGTCTTCTGGCTGTCGGCTTTTGGCAGCACGGTGGTGTCCAGCTTGGGCAGGCCATACAGGTAGATGGACACACAAACCAGTAACGCTCCTGAGGCGAAGGTCAGAGTGATCTGTAAGCCGAAGAGAGTGACGGAGGCAACGGTCGACAGCACGATAGCCGCAGCGGCACTGAAACCCTTCATGATGTTATCAGTGTACTTCACCACCACTGAGGTGTAGAGACCACCTACACTCGCTAaaaAGACAACGAAGCAGACCCAGGGTGTGTACCCATAAAAGAACCCTTTCTCCATCACCTGCGGCCCATCAGTCATACAGACTCCTGCCAGCGTCACAACAATGCCTGACAGGTACATCTGAATATTCCTCACCCACAGAGACGTATCAGAGCTCTTCAGCACCTTCTCAAAATACACACCTGCAAACCCGGAACACAACACAGCAACAGCAACGGCCACAAACCCAACAAATGGGTTCTGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33277 lncRNA upstream 29157 39139295 ~ 39144818 (+) False G24735
TU33273 lncRNA upstream 34221 39131282 ~ 39139754 (+) True G24735
TU33094 lncRNA upstream 272609 38900986 ~ 38901366 (+) True G24589
TU33079 lncRNA upstream 287110 38886443 ~ 38886865 (+) True G24578
TU33081 lncRNA upstream 289256 38884087 ~ 38884719 (+) True G24580
TU33289 lncRNA downstream 4409 39184526 ~ 39192171 (+) True G24742
TU33292 lncRNA downstream 7663 39187780 ~ 39188334 (+) True G24743
TU33307 lncRNA downstream 62325 39242442 ~ 39251843 (+) True G24748
TU33343 lncRNA downstream 167529 39347646 ~ 39347962 (+) True G24775
TU33338 lncRNA downstream 202125 39382242 ~ 39387475 (+) True G24772
XM_007259879.3 mRNA upstream 2020 39155626 ~ 39171955 (+) True rars2
XM_007259881.3 mRNA upstream 20547 39147532 ~ 39153428 (+) True LOC103047239
XM_007259888.3 mRNA upstream 240125 38928638 ~ 38933850 (+) True gjb7
XM_007259896.2 mRNA upstream 373874 38747477 ~ 38800101 (+) True rev3l
XM_022667294.1 mRNA upstream 431391 38729327 ~ 38742584 (+) False traf3ip2
XM_007259875.2 mRNA downstream 34064 39214181 ~ 39222236 (+) True LOC103045608
XM_007259866.3 mRNA downstream 185690 39365807 ~ 39368293 (+) True LOC103043278
XM_022685382.1 mRNA downstream 208750 39388867 ~ 39397878 (+) True eif2b2
XM_007259862.3 mRNA downstream 232566 39412683 ~ 39427771 (+) True LOC103042020
XM_015608501.2 mRNA downstream 488393 39668510 ~ 39669815 (+) True LOC103032515
TU33254 other upstream 128194 39045170 ~ 39045781 (+) True G24719
TU33085 other upstream 226753 38939357 ~ 38947222 (+) False G24583
TU33086 other upstream 226753 38939357 ~ 38947222 (+) True G24583
TU33100 other upstream 246993 38925696 ~ 38926982 (+) True G24594
XR_002649597.1 other upstream 456540 38667509 ~ 38717435 (+) False fyn
XR_002652014.1 other downstream 144966 39325083 ~ 39340971 (+) True LOC111196173
TU33356 other downstream 213725 39393842 ~ 39397829 (+) False eif2b2
TU33591 other downstream 639159 39819276 ~ 39825718 (+) True G24972
TU34411 other downstream 3211523 42391640 ~ 42392938 (+) True G25601
TU34410 other downstream 3211528 42391645 ~ 42392938 (+) False G25601

Expression Profile