RNA id: TU33307


Basic Information

Item Value
RNA id TU33307
length 1322
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id G24748
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 39242442 ~ 39251843 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacagggctgaGCAGCAGTGTGCTACAGATGGAGCAGGACTTTCTCAAACTATACTCCCCAAGAACAATGGGTGCCTCCACATCCTCATCCATGATGTCATTATTGTAGCATTAATGAGGTCAGAATtgagaaacaaagagagggaaaggtgagaggtgaaagagagaggggggctcAGGTGTTTAGGAAGATATTGTTTTGATGATGCAGCTTgtgtaaataagtaaacaaatcctcaacaaaaaaagaaactaaaagtaaaattgTTCTGCACgtcaattttttttctgaatttaacACATCGAAACTAaataaatttttctttttttatatttacgttaaataattgtttaaataagtatttaacTTGTTTTGCAAAATGCTGAATAATTACAGATCACTTTAGTTTATTTTGAACACACATTTAATGGTTTTATTCCAATCTGTTAAATccacaaataaacagtaattatgTTGTAAAATGTGCAGAAGGGTGCCTCGGTAGAGGATTTGAACTTATctacattacttaaatatttatatataaaaaaacattttagccaAGGGTGTCCACTCAATTTTGAGATTgaacattaatatattattattataaaaaaaaatgtttatggtCTGAAAAGGGGGTGGGTCATTTACTTAGTTTAAACTATGTTTGAGGAGTGGCATGAGTAAGCATAGATTCAggacaaaagagagaaaaaaaaatagtggggGGAAAAAGATTCTTATTTTCACCTCCCCATAAGCCCCGCCTCCTCCAACCCTGCACCTGCCCCTCTAAACACACACCGGAGTCAGACACACTTGCTGGGCCACTGGCTGAGGTTTGCGTGTGCTTCCTGCTCTTCCACAGAGCTCTGTGATGAGGAGTCCTACAGTGTGAAGGGGAGAACAAGATCCATGGATACAGGATGGACACGGGTCGCCACGGCGACATCTTTGCACCAGGCCTGTGCTGAGTGTCGCCGCAATGACAATTTTCCAAATATCAGCCCCCAAATTCCACCCTATTCAgactcttacacactcactcatacactcgcacactcacacattgCAGCTGGCGCAAAAAATTGTACTCAATTCTCTGCTCCTTACAATTTCCACTTCGTTCATTTGTTTGCTTGTCTTGCGGTGGGTGGAAGAGGATGAAGAACTGGTTTCTTTCTTTTAGAATTTTTCTGTTTGTGAAAATAAGACTTCACCATCAACTGTCCATGCTACTGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33289 lncRNA upstream 50271 39184526 ~ 39192171 (+) True G24742
TU33292 lncRNA upstream 54108 39187780 ~ 39188334 (+) True G24743
TU33285 lncRNA upstream 62325 39173975 ~ 39180117 (+) True G24739
TU33282 lncRNA upstream 66904 39173837 ~ 39175538 (+) False G24739
TU33277 lncRNA upstream 97624 39139295 ~ 39144818 (+) False G24735
TU33343 lncRNA downstream 95803 39347646 ~ 39347962 (+) True G24775
TU33338 lncRNA downstream 130399 39382242 ~ 39387475 (+) True G24772
TU33365 lncRNA downstream 153973 39405816 ~ 39408899 (+) True G24790
TU33377 lncRNA downstream 185139 39436982 ~ 39439002 (+) False G24796
TU33376 lncRNA downstream 186321 39438164 ~ 39439002 (+) True G24796
XM_007259875.2 mRNA upstream 20206 39214181 ~ 39222236 (+) True LOC103045608
XM_007259879.3 mRNA upstream 70487 39155626 ~ 39171955 (+) True rars2
XM_007259881.3 mRNA upstream 89014 39147532 ~ 39153428 (+) True LOC103047239
XM_007259888.3 mRNA upstream 308592 38928638 ~ 38933850 (+) True gjb7
XM_007259896.2 mRNA upstream 442341 38747477 ~ 38800101 (+) True rev3l
XM_007259866.3 mRNA downstream 113964 39365807 ~ 39368293 (+) True LOC103043278
XM_022685382.1 mRNA downstream 137024 39388867 ~ 39397878 (+) True eif2b2
XM_007259862.3 mRNA downstream 160840 39412683 ~ 39427771 (+) True LOC103042020
XM_015608501.2 mRNA downstream 416667 39668510 ~ 39669815 (+) True LOC103032515
XM_007259846.2 mRNA downstream 442810 39694653 ~ 39697487 (+) True LOC103036628
TU33254 other upstream 196661 39045170 ~ 39045781 (+) True G24719
TU33085 other upstream 295220 38939357 ~ 38947222 (+) False G24583
TU33086 other upstream 295220 38939357 ~ 38947222 (+) True G24583
TU33100 other upstream 315460 38925696 ~ 38926982 (+) True G24594
XR_002649597.1 other upstream 525007 38667509 ~ 38717435 (+) False fyn
XR_002652014.1 other downstream 73240 39325083 ~ 39340971 (+) True LOC111196173
TU33356 other downstream 141999 39393842 ~ 39397829 (+) False eif2b2
TU33591 other downstream 567433 39819276 ~ 39825718 (+) True G24972
TU34411 other downstream 3139797 42391640 ~ 42392938 (+) True G25601
TU34410 other downstream 3139802 42391645 ~ 42392938 (+) False G25601

Expression Profile