RNA id: XM_007259868.3


Basic Information

Item Value
RNA id XM_007259868.3
length 1094
RNA type mRNA
GC content 0.51
exon number 5
gene id LOC103043888
representative False

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 39273635 ~ 39346916 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CATGCCGCCGCGGAGGCTATATAAGCGCGCTGATGCAACGAGACTCACAGCAGCGCTCGAGCGACAGGACGGAGGGCTCGTGACACATTTCAGAcgaagaacacagGTAGACCGTAATGATGCCCACTCAGATGCGTGACCCCGTGTTGCAAGCTGGTTCTCTGCCCAGTTTGTCTCCCCTTGCTGGGTTTCCAGCCTCCACACTAACAGAGCAGCTCAGGCTTGTTGAGATGTACAGCCTCAGACCCTCAGATACTACCATAGAGCTTCTACCCGGCAAAAGACCCTTCAGTTTTCTGCAGAGTGAGGTGGCTGATGAAGatgagaggagaaagaggaggagagagaagaaCAAAGTTGCAGCGGCGCGCTGTCgaaacaagaagaaagaaagaacaggcTACCTTCAGAAAgagtCAGAGCGTCTTGAACTACTGAATGGGGAGCTGAAGGCGCAAATTGAGTCCCTGAAGAAGGAGAAGCAGCACCTCGTCCACATGCTCAACCAGCACAGACCCACCTGTATCGTCCGTAGAGACAGTGTCCAGACCCCCGAGAAGGAACAGAACCCACTACTCCAGCAGCTCTCTCCTGCCCACTGATGCCCACTCGCCACATTCATGCTGCACGCTCCTGTCACAGCCTCTTACTGCACAGCATTGTACTGcatcagagtgtgtgtgcttgGGTTGTTAATCCTATGAGACCGGCTCTGTATCCCAGCAGCTGATCTCCAGGACCACCGCAGTGAGGAGAAGAGCCGAGAGTGGAGAGCTGTGAGGGGAAAAGAGGAGAAACTGAAGTACGAATTACTTTTCCCACCAGCGCTGCCCAGCCTCACTGATGAACACTGAAAAATGCTTTCCCGTTTTCTGTTGGCTAATTGGTGGGCCATTAGCTTCCATTCATTgtaagctacattagcctcttaGCTTCATGGGGGAAAGCAAACTCGGTGACGGACTTAAGACTTGCTTGTTTAGCAGATATATAGGAATTGCCTCTACAAACTTTCAACTTCCTTATCTGTTTGGAAACTGAGGTGCAGCACATTTGCCAGTCTTGCCATGTTTAAGAAGCCAAACTGAACTGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002649667.1 lncRNA downstream 131151 39207714 ~ 39209265 (-) False LOC111191798
TU33461 lncRNA downstream 131303 39207480 ~ 39209113 (-) True LOC111191798
TU33456 lncRNA downstream 152138 39187782 ~ 39188278 (-) True G24860
TU33424 lncRNA downstream 186965 39147559 ~ 39153451 (-) True G24839
TU33428 lncRNA downstream 281850 39058005 ~ 39058566 (-) True G24843
XR_002652028.1 lncRNA upstream 125908 39472824 ~ 39480344 (-) True LOC111196213
TU33518 lncRNA upstream 152127 39499043 ~ 39499466 (-) True G24911
XR_002652030.1 lncRNA upstream 167553 39514469 ~ 39524274 (-) True LOC111196215
TU33580 lncRNA upstream 377539 39724455 ~ 39732479 (-) True G24964
TU33623 lncRNA upstream 472360 39819276 ~ 39825981 (-) True G24992
XM_007259867.3 mRNA downstream 15714 39309726 ~ 39324702 (-) True batf
XM_022685326.1 mRNA downstream 33627 39274499 ~ 39306789 (-) False LOC103034748
XM_022685336.1 mRNA downstream 33631 39274499 ~ 39306785 (-) False LOC103034748
XM_022685329.1 mRNA downstream 33632 39274499 ~ 39306784 (-) True LOC103034748
XM_007259870.3 mRNA downstream 67134 39251044 ~ 39273282 (-) True LOC103044372
XM_015608509.2 mRNA upstream 9778 39356694 ~ 39361435 (-) True LOC103042954
XM_007259863.3 mRNA upstream 35284 39382200 ~ 39387492 (-) True tmed10
XM_007259864.3 mRNA upstream 52090 39399006 ~ 39408918 (-) True zc3h14
XM_007259860.3 mRNA upstream 84747 39431663 ~ 39439043 (-) False rad51
XM_007259861.3 mRNA upstream 84747 39431663 ~ 39438918 (-) True rad51
TU33473 other downstream 15726 39309730 ~ 39324690 (-) False batf
TU33229 other downstream 413504 38925696 ~ 38926912 (-) False smim8
TU33230 other downstream 413504 38925696 ~ 38926912 (-) False smim8
TU32960 other downstream 1062824 38275472 ~ 38277592 (-) False ndufaf4
TU32826 other downstream 1396070 37938829 ~ 37944346 (-) False fam76b
TU33508 other upstream 108320 39455236 ~ 39458189 (-) True G24903
TU33946 other upstream 1867505 41214421 ~ 41218829 (-) True G25265
XR_002652122.1 other upstream 2090840 41437756 ~ 41442494 (-) False arhgap11a
XR_002652156.1 other upstream 2510122 41857038 ~ 41865844 (-) False LOC111196508
XR_002652157.1 other upstream 2510123 41857039 ~ 41865844 (-) False LOC111196508

Expression Profile