RNA id: TU33843


Basic Information

Item Value
RNA id TU33843
length 564
lncRNA type inter_gene
GC content 0.31
exon number 1
gene id G25174
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 40725799 ~ 40726362 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ttttacggtgcagtcttacagtataacaaaaataaaaaagttaaatcaacgtctcctttagttgtaataacttgatgttctaagttatgctaacttaagttttcttaacccattacttaacatttttatggcaaccggtttcctcaaatttttaaagtaaattcaacttatccgggtttacagtgtagacaATCCTAAGTTGAAGCTTTTTAATCAACCTAATTGTTATATACAGGTCTATAAATCTATATTCTGCTGTTTTCAACTTTGCTTGTGTGGTAgaaaggcgcctgttctgtgtgtgtgacattATGGTCATAGTCTACTCAGGCTGGACTCAGAGCAGCAGCCATATTCATTTGAGTAaagttgagctctgctgaacGGCAAGGCTGCGTCCAATGCAACGCAACCAAGccttaaaatgaatatattgcATTGAGGATTAAGTGCTAGTGGACACGTactgttagcctgttagcctaGACTAATTTCTTAACCTTCTTCAACAAactctgtgtgtggtgtggctAAAAGACAGTGGTGGtccatacacattttttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33791 lncRNA downstream 304626 40383601 ~ 40421173 (-) True G25128
TU33714 lncRNA downstream 494931 40175552 ~ 40230868 (-) False LOC111196341
TU33712 lncRNA downstream 495011 40175552 ~ 40230788 (-) False LOC111196341
TU33713 lncRNA downstream 495011 40175552 ~ 40230788 (-) False LOC111196341
TU33636 lncRNA downstream 877590 39845373 ~ 39848209 (-) True G24997
TU33840 lncRNA upstream 123 40726485 ~ 40728590 (-) False G25173
TU33841 lncRNA upstream 184 40726546 ~ 40728663 (-) True G25173
TU33938 lncRNA upstream 427905 41154267 ~ 41154801 (-) True G25258
TU33934 lncRNA upstream 495757 41222119 ~ 41223487 (-) True G25255
TU33951 lncRNA upstream 513307 41239669 ~ 41242371 (-) True G25268
XM_007253565.3 mRNA downstream 243256 40428985 ~ 40482543 (-) True cpa6
XM_022685582.1 mRNA downstream 367180 40319929 ~ 40358619 (-) False arfgef1
XM_022685575.1 mRNA downstream 367180 40319929 ~ 40358619 (-) False arfgef1
XM_022685572.1 mRNA downstream 367180 40319929 ~ 40358619 (-) True arfgef1
XM_022668022.1 mRNA downstream 416311 40307931 ~ 40309488 (-) True LOC111191900
XM_022685674.1 mRNA upstream 525198 41251560 ~ 41263819 (-) True LOC103046753
XM_022685670.1 mRNA upstream 553505 41279867 ~ 41391804 (-) True ryr3
XM_022685712.1 mRNA upstream 701821 41428183 ~ 41431907 (-) True LOC103044553
XM_007235259.3 mRNA upstream 705632 41431994 ~ 41435223 (-) False scg5
XM_007235260.3 mRNA upstream 705632 41431994 ~ 41435219 (-) True scg5
TU33508 other downstream 1267610 39455236 ~ 39458189 (-) True G24903
TU33468 other downstream 1378930 39273635 ~ 39346869 (-) False LOC103043888
TU33946 other upstream 488059 41214421 ~ 41218829 (-) True G25265
XR_002652122.1 other upstream 711394 41437756 ~ 41442494 (-) False arhgap11a
XR_002652156.1 other upstream 1130676 41857038 ~ 41865844 (-) False LOC111196508
XR_002652157.1 other upstream 1130677 41857039 ~ 41865844 (-) False LOC111196508
XR_002652158.1 other upstream 1130687 41857049 ~ 41865844 (-) False LOC111196508

Expression Profile