RNA id: TU33930


Basic Information

Item Value
RNA id TU33930
length 1368
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G25251
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 41222118 ~ 41223485 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AATGACTTGAATGAAATGAACAGCTTTAAACTGACGAgcgtgaaaatataaaaaagcagcttCATTTGCTCTGTAGTACCATTGAAGCAGAAAATATGTACAAcataaaaggcaaaaaaattaagaaacactTTCAAAAGCATCGTAGATCAAAACGTACAATAATTAGGACTAATAAATACCCATCATTTTTCCATTTCTTCATAAGAAGTGATACATCTTTACAAGGAAATAAGGTATACTTGCGAAAGCAGTGCCCTCTTGAGAATGGAAACAAATCTTTGTGAGCTTCAAGAACAGCACATGAAGGCAAAAAAGCAAATACGTTTTCTTTTGATTGTGCATTTTTTTGCGCTGGCAAATCATATACTGAGACGAAGGTATGAATGGATCTCACATGCAAGTAGCTTCAGAAGGTCGAAACTATAAAGTGGGATATGTACATCATGTCCggcttttcttctctttttttctgtttttggtcCTTTTAGGACGACGCAGACCGAACCACTTTAATTGTTCGAGTTTGGAGACGTGGGCAACACAAAGAAAAGCTTCTTATTTTTCCCTTGCATAACATGatacattttttgcataatatatgCAGATCTTTGAACTAATAATTTACATCCAAAATCCATGTGGTCAGTCATTTCTGCCGAAACAttctgaatacaatcaaatttaGCTTAGCGAAGTCAGTCTCACTTCTACTGAGTAGGCATTACAAAGAAGACATCTTTTACACCTGCACACATCCTGTACTCCAGGCCAGAATAAATTCCATGAGTATAGGTTAatctatattaatatattacaaatgcttttttttctctcatattTGAAGAAAAATTGTggctttcttttaataaaatagtttgtCAATGATAGAGATTAGAATTCTCttaaatgtacataaattaGTTACAAAATTTTAGTGTAATTCTCTATATTCGTAGGCAACGTCATGGGCTGTACAGCAACCGTCCCATGATAGTGATTTTAGGAAATAGGTAGGTTAAACAGTTTTTCACTCCATCAGTTAGAAAAGAAATCCTCTCTGTCCACTCGACCACGGCTCCTCGGATTAACAGGCACATTGAGTAAACTTTTTTTAGGGTATACTTTACTAAAGGGAGGCGTTTATTAGGCCGCCACGAAGCCTGCATTAACCTTTCATGACACACGTTCACACACGTATGTAACACAAGCAAGCTGTCATAAGGCCTAATGAGTTGGAATGACAGATACTGCCTTTCCTGACGTCTTTTAGACAACTGATTTGAAGGCTTTTTGAAATGAGCCTTTATAAAGGCTATATGTAGGTATATGTCAGTTGTCACCAAAGGCCTACAAAGACGTCATNNN

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33922 lncRNA upstream 74481 41146553 ~ 41147637 (+) True G25243
TU33919 lncRNA upstream 100565 41121296 ~ 41121553 (+) True G25240
TU33808 lncRNA upstream 726888 40495016 ~ 40495230 (+) True G25142
TU33666 lncRNA upstream 1208317 40004173 ~ 40013801 (+) True G25024
TU33663 lncRNA upstream 1227633 39992701 ~ 39994485 (+) True G25021
TU33981 lncRNA downstream 69979 41293464 ~ 41296688 (+) True G25287
TU34038 lncRNA downstream 216327 41439812 ~ 41442539 (+) True G25339
TU34062 lncRNA downstream 262004 41485489 ~ 41486268 (+) True G25351
TU34066 lncRNA downstream 272381 41495866 ~ 41497739 (+) True G25355
XR_002652130.1 lncRNA downstream 284503 41507988 ~ 41519295 (+) True LOC111196462
XM_007253551.3 mRNA upstream 5968 41122279 ~ 41216150 (+) True slco5a1
XM_022685621.1 mRNA upstream 106877 40922475 ~ 41115241 (+) False sulf1
XM_015608106.2 mRNA downstream 12771 41236256 ~ 41242348 (+) True katnbl1
XM_007235264.3 mRNA downstream 21052 41244537 ~ 41249571 (+) True emc7
XM_022685682.1 mRNA downstream 31229 41254714 ~ 41279937 (+) True aven
XM_022685688.1 mRNA downstream 180511 41403996 ~ 41428170 (+) True fmn1
XM_007235253.3 mRNA downstream 310620 41534105 ~ 41545497 (+) True ywhaq
TU33591 other upstream 1396400 39819276 ~ 39825718 (+) True G24972
TU33356 other upstream 1824289 39393842 ~ 39397829 (+) False eif2b2
XR_002652014.1 other upstream 1881147 39325083 ~ 39340971 (+) True LOC111196173
TU33254 other upstream 2176337 39045170 ~ 39045781 (+) True G24719
TU33086 other upstream 2274896 38939357 ~ 38947222 (+) True G24583
TU34411 other downstream 1168155 42391640 ~ 42392938 (+) True G25601
TU34410 other downstream 1168160 42391645 ~ 42392938 (+) False G25601
XR_002652205.1 other downstream 1274292 42497777 ~ 42516557 (+) True fgfr1op
TU34713 other downstream 2136984 43360469 ~ 43363444 (+) True rps29
TU34766 other downstream 2198286 43421771 ~ 43422046 (+) True G25879

Expression Profile