RNA id: TU34038


Basic Information

Item Value
RNA id TU34038
length 728
lncRNA type inter_gene
GC content 0.40
exon number 4
gene id G25339
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 41439812 ~ 41442539 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTCAGAGAGACTTGCTTcagaaaactgaagaaaaagcGGAGAGTAGACAAGTTCGTCTCAGGCACAAGGCAGGACACAAGCAGGGTGGCTGCACTCCGTTCTTCATCAGTGGCCAGACGCTGCGCTTTTGTGAAAGCCTGCAGTAAAACTGCAGGGAAAACTGGAGACGGAAGCTCATAGAAGAACTGCTTGACCAGGTTGGCCGCATCACACGGCAGGGAGGTGGATAAGCAGTCTTCCCCTTTGTCAAGTCTTGCTCTTAAGGCCTTCAGACGCACAACAGAGCCAGATTTCCTAAACAAGCCCTCAGAACCAGCATGTTTCAACAGAAGCTTACAACAGTTTACTAAAAAACATGGAACCAACCCATAATGATCTACGTTCCTCATCTGCAGATGCTGAAGGGGCACACCAAACAGCTTACTCTGAGGGCATGTTGGTGCACGGCTGCTCTCAGTCCTCTCTAAACTCGTCAGTTTCAGGTGAATTCCGTGCTCTGAACGAAGCTGTCTCAACACAGCACCTCTCAACACCTTCCTGTCGTCCGGCTTCATGTTTCGTACTCTTTATTTAGCTCTAAGTCttatagaaaatgaatgaaacactCCTACACGGAGAGTTTACCATGTTTCTCTCGCGTATTACCTCATCCTAAACCTGCTCGAACTAGCGTAGCTCCTAGCTGACCAGCTAATTAACGAAGCGTTAACGTGATAATGAGGGCGTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33981 lncRNA upstream 143124 41293464 ~ 41296688 (+) True G25287
TU33930 lncRNA upstream 216327 41222118 ~ 41223485 (+) True G25251
TU33922 lncRNA upstream 292175 41146553 ~ 41147637 (+) True G25243
TU33919 lncRNA upstream 318259 41121296 ~ 41121553 (+) True G25240
TU33808 lncRNA upstream 944582 40495016 ~ 40495230 (+) True G25142
TU34062 lncRNA downstream 42950 41485489 ~ 41486268 (+) True G25351
TU34066 lncRNA downstream 53327 41495866 ~ 41497739 (+) True G25355
XR_002652130.1 lncRNA downstream 65449 41507988 ~ 41519295 (+) True LOC111196462
TU34137 lncRNA downstream 133744 41576283 ~ 41577638 (+) True G25407
TU34157 lncRNA downstream 145560 41588099 ~ 41588458 (+) True G25426
XM_022685688.1 mRNA upstream 11642 41403996 ~ 41428170 (+) True fmn1
XM_022685682.1 mRNA upstream 159875 41254714 ~ 41279937 (+) True aven
XM_007235264.3 mRNA upstream 190241 41244537 ~ 41249571 (+) True emc7
XM_015608106.2 mRNA upstream 197464 41236256 ~ 41242348 (+) True katnbl1
XM_007253551.3 mRNA upstream 223662 41122279 ~ 41216150 (+) True slco5a1
XM_007235253.3 mRNA downstream 91566 41534105 ~ 41545497 (+) True ywhaq
XM_007235252.2 mRNA downstream 105435 41547974 ~ 41567160 (+) True LOC103041996
XM_022685790.1 mRNA downstream 146213 41588752 ~ 41621272 (+) True LOC103038512
XM_022685794.1 mRNA downstream 146213 41588752 ~ 41621272 (+) False LOC103038512
XM_007235243.3 mRNA downstream 192416 41634955 ~ 41705390 (+) True LOC103039741
TU33591 other upstream 1614094 39819276 ~ 39825718 (+) True G24972
TU33356 other upstream 2041983 39393842 ~ 39397829 (+) False eif2b2
XR_002652014.1 other upstream 2098841 39325083 ~ 39340971 (+) True LOC111196173
TU33254 other upstream 2394031 39045170 ~ 39045781 (+) True G24719
TU33086 other upstream 2492590 38939357 ~ 38947222 (+) True G24583
TU34411 other downstream 949101 42391640 ~ 42392938 (+) True G25601
TU34410 other downstream 949106 42391645 ~ 42392938 (+) False G25601
XR_002652205.1 other downstream 1055238 42497777 ~ 42516557 (+) True fgfr1op
TU34713 other downstream 1917930 43360469 ~ 43363444 (+) True rps29
TU34766 other downstream 1979232 43421771 ~ 43422046 (+) True G25879

Expression Profile