RNA id: TU34202


Basic Information

Item Value
RNA id TU34202
length 773
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G25459
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 41734587 ~ 41735710 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGCCTTCAtatcatttatttcatataaaaaagtgcaattttacattacttttataaaattattttatagcaTTACAAAGGTCACATTCCAGCAGAAAGAAAATTCACTTTACAGCACTCGCAGCGCAAGATGAACTGCTTTAAAGCTGTTCATCCGTGCACTCCATTCAGTTCAGATTTCTCAGGCCTGGTGCTGCAGACATCCTGCGTTTGAGAGCtttccctgctttaacacacctgACTCAACCCACCAGCTCCTAGATAAACCTTTCGTCAGGGTTAACTGGGTGCGTTGGAGCACTGAAAACACTAGAATGTGCTGGGACTGAGGGACTCCAGAAGTTGCACTCCCTGAAGGCCATCACTCTGGGCAGCTCACTGTGTCCCTGCTTGAAGGGCTGCACCAGTATAAGTGCTCTCACCACACCTGGGCTGTAGTGTAATCACACACTGTACAAGTTTaaccaaaaaggaaaaaaaggcattaaaatgtattctttttcttcattttgctTTGCCTCGTCTCAGTCTGTCCTGTTAAGAAATCTTCCTTTGGAAGAAGGAACTGTACAGCCtgtagataaatataaaaatcacacagAACTTTTTTCATCTCCGTTTGAGGGAAATCCATGTCATTTAAGACGAAGTCCAGGCAACGGACACAgaggaataacaaaaaaggtccTGTTTTTGCTCCGTGACCGAAACAcCAGTTTAGCTTCAGCGAGGAATTGTCACATGGTCATCTGAGGTCATTTCTGTCAGACAGCT

Function

GO:

id name namespace
GO:0072359 circulatory system development biological_process

KEGG:

id description
ko04260 Cardiac muscle contraction
ko05414 Dilated cardiomyopathy

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34201 lncRNA upstream 383 41734003 ~ 41734204 (+) True G25458
TU34161 lncRNA upstream 102426 41624781 ~ 41632161 (+) True G25428
TU34157 lncRNA upstream 146129 41588099 ~ 41588458 (+) True G25426
TU34137 lncRNA upstream 156949 41576283 ~ 41577638 (+) True G25407
XR_002652130.1 lncRNA upstream 215292 41507988 ~ 41519295 (+) True LOC111196462
TU34247 lncRNA downstream 120249 41855959 ~ 41870007 (+) True G25493
TU34246 lncRNA downstream 124941 41860651 ~ 41870007 (+) False G25493
TU34241 lncRNA downstream 129541 41865251 ~ 41865609 (+) True G25492
XR_002652170.1 lncRNA downstream 294370 42030080 ~ 42051485 (+) True LOC111196599
XR_002652173.1 lncRNA downstream 326214 42061924 ~ 42115521 (+) True LOC111196607
XM_022685849.1 mRNA upstream 1041 41711674 ~ 41733546 (+) True kidins220
XM_022685857.1 mRNA upstream 2269 41708771 ~ 41732318 (+) False kidins220
XM_007260836.3 mRNA downstream 581813 42317523 ~ 42326404 (+) True rnaseh1
XM_022685979.1 mRNA downstream 668210 42403920 ~ 42496318 (+) True LOC103042546
XM_022685989.1 mRNA downstream 668210 42403920 ~ 42496318 (+) False LOC103042546
XM_022685982.1 mRNA downstream 668210 42403920 ~ 42496318 (+) False LOC103042546
XM_022685999.1 mRNA downstream 668210 42403920 ~ 42496318 (+) False LOC103042546
TU33591 other upstream 1908869 39819276 ~ 39825718 (+) True G24972
TU33356 other upstream 2336758 39393842 ~ 39397829 (+) False eif2b2
XR_002652014.1 other upstream 2393616 39325083 ~ 39340971 (+) True LOC111196173
TU33254 other upstream 2688806 39045170 ~ 39045781 (+) True G24719
TU33086 other upstream 2787365 38939357 ~ 38947222 (+) True G24583
TU34411 other downstream 655930 42391640 ~ 42392938 (+) True G25601
TU34410 other downstream 655935 42391645 ~ 42392938 (+) False G25601
XR_002652205.1 other downstream 762067 42497777 ~ 42516557 (+) True fgfr1op
TU34713 other downstream 1624759 43360469 ~ 43363444 (+) True rps29
TU34766 other downstream 1686061 43421771 ~ 43422046 (+) True G25879

Expression Profile