RNA id: TU34247


Basic Information

Item Value
RNA id TU34247
length 3776
lncRNA type inter_gene
GC content 0.12
exon number 5
gene id G25493
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 41855959 ~ 41870007 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AATCAGACTGAATctcaaaattaatacataagccATTTAGCTCTTACCAGCACACACCAGTCCCACATCATTATCATGGGAgcagttgtgtttgagtgaagatgattttgGACAGAAGTGAATCTGTGATTCGCTGCCTCTACACTGAAGCTCCTCTAaccacacctgaccctcccctctaccaaaagcagctgctcccagaacctccacaggagaaccacagcccagctctcgacacacaacctctgcatcctgctggtcaaagtcagcatcacacactgtgacccagctctctccatgaagaacctccactctcccagcacagcggctcccaccatccaccaacctcacactgtctgtgtggagaaaaaaacaaacacactgatAATCAGAGAATAATTACactcaaataataatactcaaaCAAGgctgaaatacatttaaaccaAATCATGGACATCAAAAGCTCCCATTTAGAGATCATAAGAAATCAGTTCACTAATTTGTACTTCTATAGCAATACTAAAATGGGCTGACTGGATGATAGCAAAGTGTAAATCACATGAATGTAAGatcaaaaagtaaatatatacttTTCAATTAAATGCCACTTTATGCAACATCATTCAGCATGTCTGGTTTGGTGGGGgatcagtgatggtctggggagGCCTGTAGATGCCCAGGCCTCTACAGGTTAGACAACAGTACCCTGCCTGCTCTTAGGTATTGAGATGAAATCCTTGAACCCATTGTAAGACCCTACGCTGGCGCAGTGAGTCCGTGGTTTCTCACGGTGCATGACAATCCCCGGCCCGATGTGGAGAAAGTAGTTAAGTTCTTCGAGGATAAAGGAATTTATACCATTCACTGCCTTTCCAACAACATCCTAACAGAAAAAGAGGCCAGTATACATACAGTCCACAAAGTTAGTTTAAATATGCTGTATAGAAAAATGAGTAGAACTCGGATGTCCATCTCttgcacacacactgctcaactCAGCAGCAGAACAAGCTTTACCTCTACTCAGCCAGATAAGACTCAAGAacctgagagacagagagagagagagagagagagagagagagagagattccccACAGCCGCCAATCACACTCACTATGACCTTATTAGAAAGAGGAGAGGAAATTATCAAACATTTTCAGTGACAAATcagaagaagctttttttttcatttcgccatatttttaaaaagcgtCAGCACTAATTAACACAGCTCCACCtccttgtgtctgtgtgtgtgtgtgtgtgtgtctatgggCAAAGGAAGGTACAAAGTCAGCTACCTTCTGGAGACAAACTTCAGAGAgagtaaacacacaaaatacagcATTAAAGCTGCACCTGCAGACAGCAGATCCAAACACATAACATCCACCATGAAGATAAGTCACTTACCAAGTTCGTTCTGACAAAGTACAAGAGTCCAAACTTGCTTAATCTATAATGAGAAACGGGCCGACTCTGGCGCTGCCAGGAACTTGTGAGCCCATGGGACCACAAGGGTGGTTGAGAAAACCTTTATTCTCTCtgtaatgattaatttatttatctaaaaCAGTATGAAATGCATTAATTAACTGAAACATGTTGCTCAGTgtgcttttaaaaatgaaaaaaaaaagaagacacatTCTTTATaggtgtgaaaaaaaatcacactttattatcataatataGAAAACCATAATAATGTATGCTGCACagacatatatagatatatttttgaTTAAGGTGAAAAGCAAATATAAtttgcatgtttaccatgtgtCCACAATAAATCGTACGTATTAAAATATCCAAACCTGTTGTAATGTGTGGGCTCTCTTCAGCAGGTATGATATCATCATAGACCTCGCCATAGTTttctgtaaaaattaaaaaatgcattgcAGCACAGCAGCATCAGGATGATGGCAGCAAGACACTGTTACTCAAAGactcaaacttttaaaatactaaGGGGTTTTCAATGTATTGGTACTGTCGCCCTCTGCGATCAGAACTGGTTGACAAATCAAAGTGtgtccctttaaaaaaaaaaaaaaaaaactcccacacaccaaaggatattaactcacctcaacatgccttttgcaatccTGTAGTTACCCCTGGGCAAtcctaaaatcactattacaaactgtacagtagGCAAGACATTGTTTTTAACTTGtgccagacatggatatactggAGTAGTCAAAGATAAATTgaatttagcattagcattacccgctaaccacgctcACTATTTTCCCGTTCAGGGGTGAGTCTTATCGGCCTGAAGCCTGATGCTAACTGCTAAAACACTTCAGAACCCTACACATATTGCATGGAACTTTTttctataaaacaaaatatatatatatatgttttttcttctgcATTAAAAATTCTAACACACATTCAGTATATGTCAACTTACCTGAGAGAAGCTCCTCATCTACGTCCTCATATCCTGAATGCTGATCTTCAGAGATAAAACTTCCTGTTAGTGACACATTTATGGTTAATCTCTTCATAGACTGCCTCAAGCAGAGTCTTCCTCCTCGCCTTAGAAATcactgtgagagagaaagaaagaaacatggAGTCAGTTCAGTAGAAGAGAAGACTGATGACAGATTGAAGGACTAATGATGATTATAGAAAGTACAGAAAGTGGATTTTAGATGATCTCTAAATCTCCCTACCTCTCCTGAGCACTCTGTTCTGATAAAACAGCACAACCAGAAGCACTAAGGCCAGGAAGAGCACAGATCCCAGAACCAGGAGAGACACTGGATAGATGTATGGAAAATTAGATGATGGATTTTTTGAAGGAGGGactgtctttttctctgttagctgtgctggtactgaaaacacagaataaaaacactgttgaaCACTGCATAGTGttgtttaaacttaaaaaaaaaaaaatcacacaaaggAACTAATTAAAAGAGTACCTGTGGTGTAAGTTGTAGTTGTTTCAGATGAAAAAGGTAATGTGACAAATATGTCTGAAAGAAATATCATAAAAATGGTCAAGAAAAAGAGGTtacagaaggagaaAGTTGTATTTGTGTGAAGAGGTTATTGGACAGAGAGTAATCTCAGATTCATCTCCTCTACACTGAAGCTCCTctgaccacacctgaccctTCCCTTTACCAAAAGCAGCTGCTCCCAGAACctccacaggagaaccacagcccagctctcgacacacaacctctgcatcctgctggtcaaagtcagcatcacacactgtgaaCCAAGACGCTCCATGAaaaacctccactctcccagagcAAACATGAGGACCATCAGCAAGTCTGGATGTCCTGTGATCTGTGTGTAATGCAAAAAtgtcaaatctctctctctctcacaatcaGATTAAATAAAGACTTGTATAATAGACAAatgctaaacaaaacagaaggCTAGTAATGAGATGAAAAAATACTAGAGTTGTCAAATTAACATGTTCACTtcattaatgaataaaaaaaatgaacacaaataacaaaaatactgCTCATTAATTACCCTACTTTGTGCCCTCTGACCTCCGACGCTAGATCCCAGttcacatatcatatcaaaccacATAATCTATCCAATTCATCCATGTTAATAATACAGATTAATTTAGCTAGGAAAACAGTTGGCATCGCCAAATAGCCATAGTGGCTAATCCGCCATTTTGAAAATCATAACAAAAGATTtatagaaaaacaataaatgttttttttttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34202 lncRNA upstream 120249 41734587 ~ 41735710 (+) True G25459
TU34201 lncRNA upstream 121755 41734003 ~ 41734204 (+) True G25458
TU34161 lncRNA upstream 223798 41624781 ~ 41632161 (+) True G25428
TU34157 lncRNA upstream 267501 41588099 ~ 41588458 (+) True G25426
TU34137 lncRNA upstream 278321 41576283 ~ 41577638 (+) True G25407
XR_002652170.1 lncRNA downstream 160073 42030080 ~ 42051485 (+) True LOC111196599
XR_002652173.1 lncRNA downstream 191917 42061924 ~ 42115521 (+) True LOC111196607
XR_002652172.1 lncRNA downstream 191917 42061924 ~ 42089987 (+) False LOC111196607
TU34337 lncRNA downstream 326376 42196383 ~ 42196653 (+) True G25560
TU34376 lncRNA downstream 450904 42320911 ~ 42322260 (+) True G25577
XM_022685849.1 mRNA upstream 122413 41711674 ~ 41733546 (+) True kidins220
XM_022685857.1 mRNA upstream 123641 41708771 ~ 41732318 (+) False kidins220
XM_007260836.3 mRNA downstream 447516 42317523 ~ 42326404 (+) True rnaseh1
XM_022685979.1 mRNA downstream 533913 42403920 ~ 42496318 (+) True LOC103042546
XM_022685989.1 mRNA downstream 533913 42403920 ~ 42496318 (+) False LOC103042546
XM_022685982.1 mRNA downstream 533913 42403920 ~ 42496318 (+) False LOC103042546
XM_022685999.1 mRNA downstream 533913 42403920 ~ 42496318 (+) False LOC103042546
TU33591 other upstream 2030241 39819276 ~ 39825718 (+) True G24972
TU33356 other upstream 2458130 39393842 ~ 39397829 (+) False eif2b2
XR_002652014.1 other upstream 2514988 39325083 ~ 39340971 (+) True LOC111196173
TU33254 other upstream 2810178 39045170 ~ 39045781 (+) True G24719
TU33086 other upstream 2908737 38939357 ~ 38947222 (+) True G24583
TU34411 other downstream 521633 42391640 ~ 42392938 (+) True G25601
TU34410 other downstream 521638 42391645 ~ 42392938 (+) False G25601
XR_002652205.1 other downstream 627770 42497777 ~ 42516557 (+) True fgfr1op
TU34713 other downstream 1490462 43360469 ~ 43363444 (+) True rps29
TU34766 other downstream 1551764 43421771 ~ 43422046 (+) True G25879

Expression Profile