RNA id: TU34294


Basic Information

Item Value
RNA id TU34294
length 3518
lncRNA type sense_over
GC content 0.15
exon number 2
gene id LOC111196586
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 41869024 ~ 41880424 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tttttttttggtaagtgGATCATTTCTCTCCATCAGTTCATTAGTATTCATACTGTAGATCCATGCGGTTCTTGACTCACTTTCCAACTCGCGTTTTAGGTTTCCAAACCAAAGATTtatttctttacaaaataatacacaagaaaactgaacaaaaaacgATTAAAATGCTTATAAACAGAAAACTAGGTACTTATATTCATGTTCCTAATTCCTAAATCCTAAAACTGCGGTCAGAAAAGGTGAGGCTCCTTTGGCTTTTTACtgcttgtcttgtttttttctcctgcccaaaaaacactgtaattatcCGAATCTAACCTGCTACAGGTGCCTAGTGGTAACACACATTTCTAATGCCGTTACTGTTATACTAATACTGTCCCTTACACATACTTCGTTCTTCTCCATAATTTTAGTATTTACGTTAGGTTTTGAACCTAGCCTTAGGTACTTAACgatagttaactaggttagccaACTCAGGTTAGCTAAGTAAAGTAACTAAACTtgtttgtgtgaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaacctatcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaacatttattgtttttctataAATCTTTTGTTATGATTTTCAAAATGGCGGATTAGCCACTATGGCTATTTGGCGATGCCAACTGTTTTCCTAGCTAAATTAATCTGTATTATTAACATGGATGAATTGGATAGATTATgtggtttgatatgatatgtgaaCTGGGATCTAGCGTCGGAGGTCAGAGGGCACAAAGTAGGGTAATTAATGAGcagtatttttgttatttgtgttcattttttttattcattaatgaAGTGAACATGTTAATTTGACAACTCTAGTATTTTTTCATCTCATTACTAGccttctgttttgtttagcatTTGTCTATTATACAAGTCTTTATTTAATCtgattgtgagagagagagagatttgacaTTTTTGCATTACACACAGATCACAGGACATCCAGACTTGCTGATGGTCCTCATGTTTgctctgggagagtggaggttttTCATGGAGCGTCTTGGttcacagtgtgtgatgctgactttgaccagcaggatgcagaggttgtgtgtcgagagctgggctgtggttctcctgtggagGTTCTGGGAGCAGCTGCTTTTGGTAAAGGGAagggtcaggtgtggtcagAGGAGCTTCAGTGTAGAGGAGATGAATCTGAGATTACTCTCTGTCCAATAACCTCTTCACACAAATACAACTGCTCTCATGGTAATGATGTGGGACTTGTATGTTCTGGTACAGTATAATATGTGATATTATCGTCTAACatttctttatataatatacagtataggaGAGAACTTGCTCTTTTACGAGTCTCTTGGTTGTAAATTCAGGTCATACTCAGGCTCGGCTGATGAACGGCTCAGATTCCTGTTCTGGTCGAGTGGAgctcctatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34291 lncRNA downstream 10375 41856832 ~ 41858649 (-) False LOC111196508
TU34239 lncRNA downstream 89442 41779295 ~ 41779582 (-) True G25491
TU34219 lncRNA downstream 138555 41729831 ~ 41730469 (-) True G25474
TU34215 lncRNA downstream 139774 41719652 ~ 41729250 (-) True G25472
TU34218 lncRNA downstream 151244 41717221 ~ 41717780 (-) True G25473
XR_002649718.1 lncRNA upstream 43720 41924144 ~ 41927385 (-) True LOC111191902
TU34302 lncRNA upstream 76108 41956532 ~ 41956907 (-) True G25528
XR_002652174.1 lncRNA upstream 191629 42072053 ~ 42076721 (-) True LOC111196609
TU34336 lncRNA upstream 314583 42195007 ~ 42195290 (-) True G25559
TU34378 lncRNA upstream 437121 42317545 ~ 42324732 (-) True G25578
XM_022685895.1 mRNA downstream 3180 41857137 ~ 41865844 (-) True LOC111196508
XM_022685893.1 mRNA downstream 3181 41856709 ~ 41865843 (-) False LOC111196508
XM_022685894.1 mRNA downstream 3182 41856709 ~ 41865842 (-) False LOC111196508
XM_022685892.1 mRNA downstream 3182 41856709 ~ 41865842 (-) False LOC111196508
XM_022685890.1 mRNA downstream 3183 41856095 ~ 41865841 (-) False LOC111196508
XM_007260834.3 mRNA upstream 5151 41885575 ~ 41911776 (-) False LOC103030723
XM_007260833.3 mRNA upstream 5151 41885575 ~ 41911776 (-) True LOC103030723
XM_007260835.3 mRNA upstream 178406 42058830 ~ 42061451 (-) True sox11
XM_007260838.3 mRNA upstream 419445 42299869 ~ 42307990 (-) True allc
XM_022685971.1 mRNA upstream 429926 42310350 ~ 42316742 (-) True rps7
XR_002652156.1 other downstream 3180 41857038 ~ 41865844 (-) False LOC111196508
XR_002652157.1 other downstream 3180 41857039 ~ 41865844 (-) False LOC111196508
XR_002652158.1 other downstream 3180 41857049 ~ 41865844 (-) False LOC111196508
XR_002652122.1 other downstream 426530 41437756 ~ 41442494 (-) False arhgap11a
TU33946 other downstream 650195 41214421 ~ 41218829 (-) True G25265
TU34500 other upstream 837242 42717666 ~ 42718389 (-) True G25678
TU34644 other upstream 1218398 43098822 ~ 43111401 (-) True G25785
TU34885 other upstream 1794601 43675025 ~ 43678862 (-) True G25967
TU35290 other upstream 2888868 44769292 ~ 44799475 (-) False fkbp1b
TU35291 other upstream 2888868 44769292 ~ 44799475 (-) False fkbp1b

Expression Profile