RNA id: XM_022685901.1


Basic Information

Item Value
RNA id XM_022685901.1
length 883
RNA type mRNA
GC content 0.47
exon number 3
gene id LOC111196586
representative False

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 41869024 ~ 41880424 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tcagaggagcttcagtgtagaggaaacaaatctcagattcacttctgtccaaaatcatcttcactcaaacacaactgcTCCCATGATAATGATGTGGGACTGGTGTGTGCAGACAGTGTGAGGTTGGCGGATGGTGGCAGTCGCtgtgctgggagagtggaggttcttcatggagagagctgggccacagtgtgtgatgctgactttaaccagcaggatgcagaggttgtgtgtcgagagctgggctgtggagaGCCGTTTAGGACTGATGCAGCTGTTCCAGGATCTGCACCGATCTGGATGAGTCATGTGAAGTGTACTGGATCAGAGTCTACACTGAAACACTGTGGATCATTAGGGTGGGGTGAACACAGCTGTAATCATAATATGGATATtgagcttacctgttcagATCACAGGACATCCAGACTTGCTGATGGTCCTCATGTTTgctctgggagagtggaggttttTCATGGAGCGTCTTGGttcacagtgtgtgatgctgactttgaccagcaggatgcagaggttgtgtgtcgagagctgggctgtggttctcctgtggagGTTCTGGGAGCAGCTGCTTTTGGTAAAGGGAagggtcaggtgtggtcagAGGAGCTTCAGTGTAGAGGAGATGAATCTGAGATTACTCTCTGTCCAATAACCTCTTCACACAAATACAACTGCTCTCATGGTAATGATGTGGGACTTGTATGTTCTGGTACAGTATAATATGTGATATTATCGTCTAACatttctttatataatatacagtataggaGAGAACTTGCTCTTTTACGAGTCTCTTGGTTGTAAATTCAGGTCATACTCAGGCTCGGCTGATGAACGGCTCAGATTCCTGTTCTGGTCGAGTGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34291 lncRNA downstream 10478 41856832 ~ 41858649 (-) False LOC111196508
TU34239 lncRNA downstream 89545 41779295 ~ 41779582 (-) True G25491
TU34219 lncRNA downstream 138658 41729831 ~ 41730469 (-) True G25474
TU34215 lncRNA downstream 139877 41719652 ~ 41729250 (-) True G25472
TU34218 lncRNA downstream 151347 41717221 ~ 41717780 (-) True G25473
XR_002649718.1 lncRNA upstream 49602 41924144 ~ 41927385 (-) True LOC111191902
TU34302 lncRNA upstream 81990 41956532 ~ 41956907 (-) True G25528
XR_002652174.1 lncRNA upstream 197511 42072053 ~ 42076721 (-) True LOC111196609
TU34336 lncRNA upstream 320465 42195007 ~ 42195290 (-) True G25559
TU34378 lncRNA upstream 443003 42317545 ~ 42324732 (-) True G25578
XM_022685895.1 mRNA downstream 3283 41857137 ~ 41865844 (-) True LOC111196508
XM_022685893.1 mRNA downstream 3284 41856709 ~ 41865843 (-) False LOC111196508
XM_022685894.1 mRNA downstream 3285 41856709 ~ 41865842 (-) False LOC111196508
XM_022685892.1 mRNA downstream 3285 41856709 ~ 41865842 (-) False LOC111196508
XM_022685890.1 mRNA downstream 3286 41856095 ~ 41865841 (-) False LOC111196508
XM_007260834.3 mRNA upstream 11033 41885575 ~ 41911776 (-) False LOC103030723
XM_007260833.3 mRNA upstream 11033 41885575 ~ 41911776 (-) True LOC103030723
XM_007260835.3 mRNA upstream 184288 42058830 ~ 42061451 (-) True sox11
XM_007260838.3 mRNA upstream 425327 42299869 ~ 42307990 (-) True allc
XM_022685971.1 mRNA upstream 435808 42310350 ~ 42316742 (-) True rps7
XR_002652156.1 other downstream 3283 41857038 ~ 41865844 (-) False LOC111196508
XR_002652157.1 other downstream 3283 41857039 ~ 41865844 (-) False LOC111196508
XR_002652158.1 other downstream 3283 41857049 ~ 41865844 (-) False LOC111196508
XR_002652122.1 other downstream 426633 41437756 ~ 41442494 (-) False arhgap11a
TU33946 other downstream 650298 41214421 ~ 41218829 (-) True G25265
TU34500 other upstream 843124 42717666 ~ 42718389 (-) True G25678
TU34644 other upstream 1224280 43098822 ~ 43111401 (-) True G25785
TU34885 other upstream 1800483 43675025 ~ 43678862 (-) True G25967
TU35290 other upstream 2894750 44769292 ~ 44799475 (-) False fkbp1b
TU35291 other upstream 2894750 44769292 ~ 44799475 (-) False fkbp1b

Expression Profile