RNA id: TU34411


Basic Information

Item Value
RNA id TU34411
length 1299
RNA type TUCP
GC content 0.40
exon number 1
gene id G25601
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 42391640 ~ 42392938 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ACCAAAAGGCAGAAACAGTGGCAAAGGTGTTATGGAAAAACTTCTTCTGCAAGTTTGGGTTCCCAGCAAAGCTCCATGCAGACCAAGGACGAAACTTTGAGAGTACAGTTGTCAAAGAGTTGTGCAGGCTAACAGGTACCCAAAAGAGCCACACTTCACCCTACCATCCCCAAGGAAACGGGACAACCGAAAGGTTCAACCGCACCCTGATGAACCTAATGGGTACGCTGCCTCCACAGTCCAAGGCACGCTGGCATGAGTACATTGATGCACTGACCCACGCTTATAACTGTACCCGCCATGACTCTACAGGTTACACACCTTACTACCTGATGTTTGGCCGACACCCACGGCTACCCATTGACCTTGTATTTGGATTAGCTCCAGCTACTGATTACTGTGAACACTCAGACTATGCCAAGACCCTGCATGACAGTCTCAAATATGCTTTTGAGCAAGCCAACCTCACCTCCAGACACTCCAAAGAGACGCAAAAGAAGCACTATGATGTGAAGGCAAAGGTCAGACAATTCACACCAGGTGACCGTGTGCTGATTAAGGTCTGTCATACGGAAACCAGACAGAAGCTGGGTGATAGGTGGGAACCAAAGCCCCTACCTGGTCATAAAGAAACAGCCTGGAATACCTGTGTATGTTGTTAGATCAGAAGATGGCGCTGTAGAAAGGGTGGTACACCAGAATCTCATGACCCAGTGCATGTTCTTCCCTTTAGAGCCCGAGCAGGTTCAGGAGCATGAAGAAGAGGAGCAGAGCTCAAGCGACAGTGAGGACTCAGAAGCAAGTGAGGGTGATGTGGACAATCAGGAGGTGAGCTGTGGACTTGGAGGACTGAGGAGTGATACCTCTGAAATTGAAAGCACAGATCACATAGGAGGTAGCTCAGATGCCCAGGGCTGCTCCGCCCTACCACAAACTCAAAACCCTGGCACAAGAGAGCCAGAGGAAACTATGGCCCAAGGTGTTCAGAACTCGCAAGTACCCAAAGAGTGCAGCGACAGTAATGATGCCCCCGCCGCAATCCTCCAAGAAAGAGGCGAGCACCGAATAGACTGTCGTATCAGATGTATGTCCCTGGAGAGGAGACTGTGGAGGACAAGATAAACAGAGGACGGAGAATATGGGAGCTGGCTAGAATGGGGAATGGCAGAAACGATACCTTACATACATGACACAcaacccacccacacacacagcacacaaacatacatttaaGTAACTCAGAGACCCAGTTAATGTTCTTGCTGTTGGGGGTCAGTGTTATTTAGATGGCAGGGACGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34376 lncRNA upstream 69380 42320911 ~ 42322260 (+) True G25577
TU34337 lncRNA upstream 194987 42196383 ~ 42196653 (+) True G25560
XR_002652173.1 lncRNA upstream 276119 42061924 ~ 42115521 (+) True LOC111196607
XR_002652172.1 lncRNA upstream 301653 42061924 ~ 42089987 (+) False LOC111196607
XR_002652170.1 lncRNA upstream 340155 42030080 ~ 42051485 (+) True LOC111196599
TU34412 lncRNA downstream 4064 42397002 ~ 42397298 (+) True G25602
TU34442 lncRNA downstream 110843 42503781 ~ 42505297 (+) True G25624
TU34443 lncRNA downstream 126703 42519641 ~ 42519942 (+) True G25625
TU34471 lncRNA downstream 212963 42605901 ~ 42606128 (+) True G25650
TU34468 lncRNA downstream 324720 42717658 ~ 42718389 (+) True G25647
XM_007260836.3 mRNA upstream 65236 42317523 ~ 42326404 (+) True rnaseh1
XM_022685849.1 mRNA upstream 658094 41711674 ~ 41733546 (+) True kidins220
XM_007235245.3 mRNA upstream 659322 41708770 ~ 41732318 (+) False kidins220
XM_007235247.3 mRNA upstream 659322 41708771 ~ 41732318 (+) False kidins220
XM_022685857.1 mRNA upstream 659322 41708771 ~ 41732318 (+) False kidins220
XM_022685979.1 mRNA downstream 10982 42403920 ~ 42496318 (+) True LOC103042546
XM_022685989.1 mRNA downstream 10982 42403920 ~ 42496318 (+) False LOC103042546
XM_022685982.1 mRNA downstream 10982 42403920 ~ 42496318 (+) False LOC103042546
XM_022685999.1 mRNA downstream 10982 42403920 ~ 42496318 (+) False LOC103042546
XM_022685984.1 mRNA downstream 10982 42403920 ~ 42496318 (+) False LOC103042546
TU33591 other upstream 2565922 39819276 ~ 39825718 (+) True G24972
TU33356 other upstream 2993811 39393842 ~ 39397829 (+) False eif2b2
XR_002652014.1 other upstream 3050669 39325083 ~ 39340971 (+) True LOC111196173
TU33254 other upstream 3345859 39045170 ~ 39045781 (+) True G24719
TU33085 other upstream 3444418 38939357 ~ 38947222 (+) False G24583
XR_002652205.1 other downstream 104839 42497777 ~ 42516557 (+) True fgfr1op
TU34713 other downstream 967531 43360469 ~ 43363444 (+) True rps29
TU34766 other downstream 1028833 43421771 ~ 43422046 (+) True G25879
TU34767 other downstream 1031454 43424392 ~ 43424906 (+) True G25880
TU34777 other downstream 1097848 43490786 ~ 43494315 (+) False LOC103033920

Expression Profile