RNA id: TU34910


Basic Information

Item Value
RNA id TU34910
length 2580
lncRNA type inter_gene
GC content 0.43
exon number 6
gene id G25986
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 43866376 ~ 43885038 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GAGAGCATTCCATATACAGGCACAGATTGGCGTGGAAATGgaagggaaaagaaaaaaaaaaaatacaataaaatcgTTCAGCATGAGTCCCATAATGCATTGGTGCTGAGACAGAGGTAActgctaaaaatattaaaaggcaAAGTGTAAATATGTAGTCGTATGTTTAGATACATATTATCAAAACAGAATTGCAAGAGATTTAActctgtgcatttttttttttttatgtcaatcTAACTGTCCAGGAAATCGCTCCACAAGTCATTAAGTACCAGAGTTGCGTGCAcattgtatgtatgtttatttattgatataatttttatttatttattattattaaattaaaaggtCTAAACAGGAAAGGTCTACATAATGTGTGATGGCAGTACACAGTCtgtcagttaaaaataaaaagcaatcagaaaattgagaaaatcactaaaataaatgtaagagtCTGTGTAAGTATAAATACTGTAACTCCACTGTTTTCCTTCCTCCTCTCCTGAAAAAGCATACAGTCACATACTGTGGTAAACACGCGTCCGCCATTGCTATAACCTGCTaactgcatctgtgtgtgtgtttgtgattccAAACTTCAAAAACAGAAGTGTATACCCAACACAATCATCAtcgttatcatcatcatcatgtagTTTGAATTCTTCGTAACCAAACACTTGTTTTGTCAAATGACACCacattcactctcactctctttcagtCAACTGAGTCAATCCCTTTCATTCTCTCCTCAACTAACTATTCATGCCTACAAGTAACCTCACACCACCTTCCCTATACCTTTCCTCACAGGCCTCTCCTATCAGTTTTAGAAATGAAAAAGTTGAGGAAACACCAGTCATTATTAAACCATCGTTCAACCTCACAACTCACATCAATCTCATCAAATCCAACTACAACACCACCTCACCCTTCCACTCCCTCAAGatcaagaaaaaaattatatatatatatatatatatatatataaggcccGGCCTTGTGCAATATCTATGGCAttgtgctaatgctaaatcCAGACTGTGTGGATATCTGTGGTAGTGTGTTCAGTCTATCTACAGCTACGCCGCAGCGGTTCACATAGAAAAGTCCACTAAGTCCATTTCTGAACCCCCTCAACAGATTCCTAAGCCCCATATCTGACTCAAATCAGTCCTATCCAAGTTCCAATGCATCCCCAGCAATATCCACATCAATTCCACCTCTAAATCACTGCACGTTTACccaaaaatctctctctctctctctgctagaAATGAACAGACCATCTCATTTCCAGCAGCTTATAAATACAAAGTAAGGCACTGAGTAAATACTACGGAAGTATTAAATGTTGGCACCTTTGTAACACATGCAGAACTACATGCTACTTTATTTGAAAGGCATTATCTTTTGCTTAAGCGTTCTGTTGTGGTTAATCATCTCTCAGGCAGGAACTTGAAATGTGAAAATAATCCAGCGATGGCAGAACAAGGTGATCATGGGTATAGCACCTCCTCCCTCAAATCAGCTTGGTCTGatttgtatgtgtatatgtaggtgggtgtgtgtgtgtgtagactgaGAGAAATCcccaaaagtaaattttaatatTGACCTCAATGCAGTGCCCATCACAAATCCCCCACTGTTCATCAggaaagaccaaaaaaaaaaagataaaaacaaaagcaagaaaAAGGAGGTCTTCCAACCAGACTCAAATGAATCATTTGACTGGCTTTGATTCAGATTCATTTCTTCATCCACTGATTTGAAGTCAGGTTTAGCTTTCTCTGGTAgttgtgctggtggtggtggttggggGAGGTGTTTAAGGTGGGGACAGTGGCACTTGGGTCAAAAGGGTCTGGGTTCATAGATCAGGCCTGGGGCCACGTCTACAGGTCGTCGCTCTCCACCAGGGTGCCGGGGGGTAGAGGGCTGGAGTCAGGGAAGAAGGCTGCCTTCACGTCGAGGCCCCGCTCCGTCAGGGCAGCGTAGCGGCTGGCTGAGGGACGCACCTTCTTCGGCTTAGGGGTGTTTGGCTGCTGCCATTGAGTGTGTACGTCCAGTCGTGCTGTGCTAGACACAATGCCAGCTTCGTTCTTGGCTGAGACAGTGTACCATCCCGCGTCTTCCTTCAAAGCCGGCTGGATTATCATGCACAGGTATCCAAAGTTGTcctggtgcatgCTTATTCTGTCTGTGTTGTGAGTGATGGACTCGTTCTCCTTCTTCCAGAAAATCTGAGGGAACGGGACTCCAGACACACGACACTCCAAGCGAACAGGGTAACCCTCTGCTACGCCGTGTTCTGAAGCTTCTCAATGAAGGTGGGGGCTTTGTGCATCTCTTTAGCTGCTACTATCAGCTCCAGGCTGAAGGAGTTCTGTCCGGCCCTGTTGCTGGCAATGCATGTATACACTCCTGCATCTCTGTTTGTGACTGGCTCAATAACCAGTGAATGGACTCCGTTTTCTCGCACCAGCATCTTATGGGCGGAGTCTGGGCGGATGGTCTGGCCGTTCAGCTGCCAGATCAGATCAGGGGTAGGCAGACCGCTTACCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34785 lncRNA downstream 359528 43516625 ~ 43517100 (-) False LOC103027084
TU34784 lncRNA downstream 360082 43495509 ~ 43516546 (-) False LOC103027084
TU34794 lncRNA downstream 392260 43484089 ~ 43484368 (-) True G25903
TU34793 lncRNA downstream 414474 43461669 ~ 43462154 (-) True G25902
TU34757 lncRNA downstream 513538 43360488 ~ 43363090 (-) False G25874
TU34938 lncRNA upstream 13998 43899036 ~ 43899751 (-) False cbr4
TU34947 lncRNA upstream 36838 43921876 ~ 43924352 (-) True G26009
TU34963 lncRNA upstream 115950 44000988 ~ 44001408 (-) True G26024
TU34964 lncRNA upstream 130102 44015140 ~ 44015348 (-) True G26025
TU34982 lncRNA upstream 150489 44035527 ~ 44035757 (-) True G26031
XM_007245326.3 mRNA downstream 160430 43709728 ~ 43716198 (-) True LOC103035417
XM_022678289.1 mRNA downstream 172659 43688898 ~ 43703969 (-) True LOC103035096
XM_007245324.3 mRNA downstream 203638 43666847 ~ 43672990 (-) True LOC103034775
XM_015604839.2 mRNA downstream 211826 43599657 ~ 43664802 (-) True LOC103027377
XM_022686394.1 mRNA downstream 359471 43495419 ~ 43517157 (-) True LOC103027084
XM_007245330.3 mRNA upstream 5591 43890629 ~ 43899760 (-) True cbr4
XM_007245332.3 mRNA upstream 5630 43890668 ~ 43899727 (-) False cbr4
XM_022686450.1 mRNA upstream 61941 43946979 ~ 43981364 (-) True kifap3
XM_015604841.2 mRNA upstream 317081 44202119 ~ 44219005 (-) True slc25a24
XM_015604837.2 mRNA upstream 371413 44256451 ~ 44263193 (-) False LOC103039281
TU34885 other downstream 197766 43675025 ~ 43678862 (-) True G25967
TU34644 other downstream 765227 43098822 ~ 43111401 (-) True G25785
TU34500 other downstream 1158239 42717666 ~ 42718389 (-) True G25678
XR_002652157.1 other downstream 2010784 41857039 ~ 41865844 (-) False LOC111196508
TU35290 other upstream 884254 44769292 ~ 44799475 (-) False fkbp1b
TU35291 other upstream 884254 44769292 ~ 44799475 (-) False fkbp1b
TU35356 other upstream 982056 44867094 ~ 44870679 (-) False ubxn2a
TU35363 other upstream 997740 44882778 ~ 44885801 (-) True G26295
TU35470 other upstream 1551071 45436109 ~ 45437585 (-) True G26388

Expression Profile