RNA id: TU35027


Basic Information

Item Value
RNA id TU35027
length 1633
lncRNA type inter_gene
GC content 0.48
exon number 4
gene id G26043
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 44256473 ~ 44263202 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ttgccaTTGACATACAATCAAATACAGCACAGACAAATTTAAGCTATGTACAAAAATGTTTGAATCATACATGTTCAAAATCCCTGACAAATCTTAATTATacatacaatacagtacaaaagCACCTACTAGCAGGCAAGTGGtttctcaaacttttttttttaattgcacctCATAGACTTAACATTTGTGATGTCTGGAGGGGCCCAAATGACTAGTTTGAGGACCACTGCATTAGTCCGTTAAAAGAGAGATGGGAAATTTAACAGGTTTTGTCTCAAGGGGGGTCTATGGCCTGGTGGACCCTCTTCTCCAGCTGTAGTGCAGTGGGTCTGGCATCAGGGTCGTAGGCCAGCATATCCAGCAGCAGTGTGCAGATGGCAGAGTTCGGAGGAGGTGGCACTGGTGGAGCCCGCCGGGCCTTTATGGGAATGACCAGCTGCAAGGAAGGGTTTTGACAAAGGGCCTCTCCCAGTGGGGTAATCCATCGACCCCTTTCCACATACGCTCCCAGCTGCTCCTGGTTAGAGCCATCCTCATAGAAGGTGATTCTCTCCAACACAGCCCAGAAAAGCACACCCAAAGAGAAGATGTCGGCCTGGGCAGTGTAGTTGAGGCCAGCCCACACCTCAGGAGCCATGTAGAAGTCTGAGCCACAAGTAGAGGAGAGGGCCAACCTGCTCTGCTCTCCATCTGTGGGGCCCTCCACCATCTTGCTGAGCCCAAAATCTGCCACCTTACCACTGGCCCAGTTTTAGTCAGACAAACAAGAACGTTGTCTGGCTTTAGGTCTCTATGCACTATGCCCAATCCATGAAGGAAGGCCATAGCACTACTGAGCTGCCGTACAACCTGGTGATTACGCTGGGAATCTGGACACATGGACAGCATGTACTGGTTTAGGTCACCTCCTTCACAGTACTCCATGACCAACCACAGGGCAAAGCAGCGTTTAGGCACCTCCTCTGTCTGTGCTATCCTTCTCCTCGTCCTAGACGTGTTCCTCCTCTGGCTTTTTGAGTCTTTGTCAACAACTCTTCCTTTAAGAGCGCTCTCTACCAGGTCCAAAGGCAGCCTGCTTGACTTCAGAGGCTGCAGTGTTTTAGGTCCCGTCTGCAGGAAGCAGTTGTAGAGGGCAATGACATTAGGATGGTTTCGGGCTGTGGCTCTCATAGCCCAAAGTTCTTGCAGGTAAAGTTCAATGCTTTCTGGGCTACAGCAGGGGAGGCGTTTGATAGCCACCGTGTCCCCACGCTGACCCCACCAGCCAGTCTCGGTAACACGACCCTCAAACACAACTCCATAACTGCCTCGACCAACCTCCCGCTGCAAAGTGTACACTTCGTCCATTTTAGTTGTAACTAAGCTCCCACAGCTCCTCACCtgcaaaataaaacatggagcatcttttgctggagcggagagtaaacagctggtctgaagtacatgctcaagTCGAGGAGGTAAACAGGGTTTTCGCAGTCCAGTTAGTTTTCCCAGAGAGAACACAGCTGTTAATGTGTCTTAATCCAGCAACAACTAAAATAAATCATACAAAGATGATTTTAATGTCACTTTGCAAATGCGGATTACAGGACTATAACACTGTATCATTATTGTGACAAACTGTTAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35019 lncRNA upstream 53939 44107941 ~ 44202534 (+) False G26039
TU35012 lncRNA upstream 53939 44117024 ~ 44202534 (+) True G26039
TU34860 lncRNA upstream 332204 43921539 ~ 43924269 (+) True G25956
TU34829 lncRNA upstream 552776 43703183 ~ 43703697 (+) True G25934
TU34820 lncRNA upstream 582754 43666621 ~ 43673719 (+) True G25925
TU35086 lncRNA downstream 11278 44272294 ~ 44272504 (+) True G26088
TU35127 lncRNA downstream 58970 44319986 ~ 44323822 (+) True G26107
TU35145 lncRNA downstream 103576 44364592 ~ 44367931 (+) True G26121
TU35148 lncRNA downstream 116309 44377325 ~ 44377527 (+) True G26124
TU35252 lncRNA downstream 422172 44683188 ~ 44688403 (+) True G26202
XM_007245341.3 mRNA upstream 2241 44220915 ~ 44254232 (+) True elp3
XM_022686524.1 mRNA upstream 2306 44219205 ~ 44254167 (+) False elp3
XM_022686496.1 mRNA upstream 60591 44150193 ~ 44195882 (+) False LOC103028637
XM_007245347.3 mRNA downstream 20106 44281122 ~ 44297719 (+) True pnoc
XM_007245348.3 mRNA downstream 78230 44339246 ~ 44347656 (+) True LOC103041645
XM_007245350.3 mRNA downstream 96260 44357276 ~ 44359403 (+) True LOC103042260
XM_022686599.1 mRNA downstream 156422 44417438 ~ 44460259 (+) True cdc42bpb
XM_007256619.3 mRNA downstream 199669 44460685 ~ 44471931 (+) True vipas39
TU34777 other upstream 762158 43490786 ~ 43494315 (+) False LOC103033920
TU34767 other upstream 831567 43424392 ~ 43424906 (+) True G25880
TU34766 other upstream 834427 43421771 ~ 43422046 (+) True G25879
TU34713 other upstream 893029 43360469 ~ 43363444 (+) True rps29
XR_002652205.1 other upstream 1739916 42497777 ~ 42516557 (+) True fgfr1op
TU35893 other downstream 2267379 46528395 ~ 46530387 (+) False fau
TU36151 other downstream 4017251 48278267 ~ 48282874 (+) True G26915
TU36153 other downstream 4019749 48280765 ~ 48282874 (+) False G26915
TU36264 other downstream 4294781 48555797 ~ 48558740 (+) True G26995
TU36265 other downstream 4294781 48555797 ~ 48641905 (+) False G26995

Expression Profile