RNA id: TU35086


Basic Information

Item Value
RNA id TU35086
length 211
lncRNA type inter_gene
GC content 0.60
exon number 1
gene id G26088
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 44272294 ~ 44272504 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCCGTGCCGCATCCAGTTTCAGACTGATGAGCCACATCTGAAATGGTCGGATGTGGAGCTTCCCCAGTGCCACCACCTGCGCAGCGGCGGTGAGAAGACCTTGTAGTCGCAAAAGCCTCACATACTGCACCTTGGCGCCCCACCTGAGGCTGTGAATGGCCGATAGTATAGCCGCAGCGCGAGCTGAAGGCAGGGTGGCCAACATGCGACG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35026 lncRNA upstream 9092 44256473 ~ 44263202 (+) False G26043
TU35027 lncRNA upstream 11278 44256473 ~ 44261016 (+) True G26043
TU35019 lncRNA upstream 69760 44107941 ~ 44202534 (+) False G26039
TU35012 lncRNA upstream 69760 44117024 ~ 44202534 (+) True G26039
TU34860 lncRNA upstream 348025 43921539 ~ 43924269 (+) True G25956
TU35127 lncRNA downstream 47482 44319986 ~ 44323822 (+) True G26107
TU35145 lncRNA downstream 92088 44364592 ~ 44367931 (+) True G26121
TU35148 lncRNA downstream 104821 44377325 ~ 44377527 (+) True G26124
TU35252 lncRNA downstream 410684 44683188 ~ 44688403 (+) True G26202
TU35266 lncRNA downstream 463330 44735834 ~ 44736653 (+) True G26216
XM_007245341.3 mRNA upstream 18062 44220915 ~ 44254232 (+) True elp3
XM_022686524.1 mRNA upstream 18127 44219205 ~ 44254167 (+) False elp3
XM_022686496.1 mRNA upstream 76412 44150193 ~ 44195882 (+) False LOC103028637
XM_007245347.3 mRNA downstream 8618 44281122 ~ 44297719 (+) True pnoc
XM_007245348.3 mRNA downstream 66742 44339246 ~ 44347656 (+) True LOC103041645
XM_007245350.3 mRNA downstream 84772 44357276 ~ 44359403 (+) True LOC103042260
XM_022686599.1 mRNA downstream 144934 44417438 ~ 44460259 (+) True cdc42bpb
XM_007256619.3 mRNA downstream 188181 44460685 ~ 44471931 (+) True vipas39
TU34777 other upstream 777979 43490786 ~ 43494315 (+) False LOC103033920
TU34767 other upstream 847388 43424392 ~ 43424906 (+) True G25880
TU34766 other upstream 850248 43421771 ~ 43422046 (+) True G25879
TU34713 other upstream 908850 43360469 ~ 43363444 (+) True rps29
XR_002652205.1 other upstream 1755737 42497777 ~ 42516557 (+) True fgfr1op
TU35893 other downstream 2255891 46528395 ~ 46530387 (+) False fau
TU36151 other downstream 4005763 48278267 ~ 48282874 (+) True G26915
TU36153 other downstream 4008261 48280765 ~ 48282874 (+) False G26915
TU36264 other downstream 4283293 48555797 ~ 48558740 (+) True G26995
TU36265 other downstream 4283293 48555797 ~ 48641905 (+) False G26995

Expression Profile