RNA id: TU35127


Basic Information

Item Value
RNA id TU35127
length 3817
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G26107
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 44319986 ~ 44323822 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ctaatttaatatttataacatcTCAGATTTTCTGTGCAAGTACTTTTGAGCTGATTAGTACTGGACTGTGTAATTGCATGCATTTCATAATCAGTACACTCCAGGACTTGGAAAAATCACCTTCTGTAAActcttaacacacacatacacacacacacacacacacacacacacacctaatacATCCTTTTTGTTCAAAGATCTCTTATTTTACCAGCTGCTCAAGGTAATAATGATTCAATTaatgaaatacagtacattGTAATTAGAGTGTAAAAAACAAAGACACTTATTAGCatattaaactgtgatttttcAGCCAGctttacatatacagtataaatggaCACCCAGATCTGCTGCGCTGCTCTCTCCTGTACTAGCATCTGATCAGCTCTTTGGTGGAAGCATTCTCTGGGAGTCTTGGATTTGCTGAATGCAGCATAAAAGCAACTTCTTTGTTTGTCCATCCCACCCCCAGATTGCAGCAAACCCAAATCCAGCAGATTAttccttctttccttttttattagcCCTAGACTGAAAAAGGATTTGTGGCAAATAGGTCACTCTTCTAGACATGCATAATGCTTTGGCCATGGGGGAATGAACACTGGCTAAGCTATAGATTACTCACACATGAGAGTCAGACCACTAACCTTTATTATGTAAACTGACTGAAagtttctgtttctgtaaacTGACTGTTAATGGTCAGTTATGAGGCAATCAGTGcatattttataaaacaacTCATTTGACAAACAGAAGGTCTGGTcatatttcttatgttttaaaacacGTGATAGCTGACCAACATTTATCAATAGCTTTCATTAAAACAAGTTCTCAATGTTGCATCATCAAGCATGctgttgtatatttttttgaatGATACGCACACCATATAAACACTAGAAATATCTCAAAACCATCCATGAAGAAACACTTTTGTTCCATGAGACTGTCACAAGGTCTGTTATGTCCCTTTTTTGGGCATAGCTTTAGATTTACACAAcacaattaaataatgaaactaCAATGACCCTGTAATGTTTTGAAGAGATACAACAAAAACTCCACTTCAGTCGCAttcacaccttttttttttacactgctttGAGACACAAAGACATAGTTTGGATTCCCCATCTAACCCAAATGTAGTCTATCAGTCAAAGCATGTTTGGTATTGGTAAAATCAGCAACCAGGCTAAAACTACTAAGAAATAACCAAAGCCAGTACTATGGCATTAGTACTTTGTGGAAACAGTTTGCATCAAATTATGGAtgaagttatttaaaaatattgcattcaactgtgtcagtgtgtattgttttatattgttttattgatgTTTACCAATAAAGTCTTGCTGGATGGTCAATAAAATGTCCCCATGGTTTGCCCAACATCACTGAATCAAGCAAAAAAGACAACTAAAACCATGTAGAGGTAGTTTTGCAGGCCAGACCTGTGCCTATATTCAGATAGCCTGCTGCTTTTTACCTCTTAATGCGGCCTCACTCTAAAAGCTGCCTAATTAACAGTAACAGCAGTGTCAGCATGGCATGTAGGAAAACACAACTGTGAACAATCCCACAGATAAACAATACAGAAATCTTAGACACCTAAGGAAATTAGAAGTTAATATATAATGACACATACAACcattacacatttaaaacttaaaatgttaattgtcTAGTCAGTGAGTGTTTATTTGCTCAGACAAATGCAAATTAAGTccagttttattagttttaatgcAACACCTGGTTAAAATCAAGTGTGCTCCTGTTGTCTGAAAAACGTTAAATGATCACTGTTGAATCTtctgtgtatattttataattgtataaaaataaaagtgtttgaaCAATGTTGAACTGTTTATGCTCTGAACATTGGCTCCCACTGGCCTGGTCAGTACTCCATCCCTGGAATCAAATCAGTGCATTTCTTACTAGTActaattttattatatctgcatttattctaataataaatggtgtttttttttctgtacgtATAAATACACTTATTACCAGGATAAATGTTGTGCCTATTTTCAGACTTTTGCACATAACTGTAATCAACAGTTTTCTCATGATTCTCTAATGTAGATAACCAATCAGAATGCAACTGACAAAACACCCTTGTGCACAGTATAACCTGTGTAAGATGCAGCATTTACATGTATACAAGTTGAAAACCTGAGGCTGAGACTACAGTAGAGGTGTATTTTATGCTGGAATGTAGCAAACCTGTGAACTGACTGGGGATCTGAGTTATTCATTGTATGTTTTTCAGTCTAATTCATCCTTCATTCCCTCTTTTGTAGCTGCCTTTGAACACTCCTCCTCATAAGAGCTGCGGTCAGAATACTGCATAGTACCAGAGCAAAGAAAGAACCTCCAGCTAACAAAATGGCCCACTCCCCATGCACCTCCAACACAGAGTGTCGCTGCATTAAGAAGTCTTTACACACCGCCTCCATCTGGCACATGGTGCACATGACCAGGAACAGGTGAAAGATCTGGTGGCCGTGACCCACAATATCACACCTCCCTGGGAAAAATCGTTCAGGCACAGgacaggagaagaagaaggcGGCCTGCATGAAGAAGAGCACCTGCAGCGCGTGCAGCACCAGCCCTGGTTCATTCCAGGGCTCAGTGGCCAGCCGGTGGGCCACGGGGCTGATATCCAGGAGGTAGGCCAGGCTGGTGGGCACAATTTGGAAGAGCTTCCTGTGGGGTGGGTAGGGCCGCTGGTAGCGTAGTTTAGCGAAACAGCAGCTGGCACATGATAACCAGCCTAGAAGGGCTGCTCCAGGTAGGAACAGCTCCCCCACAAAGCTCTGCCTCCATGCTGCCTTAGAGCAGAAGAAGTAGTGGGCCAGTGCACAGCCATACTGGTATACAGCCACACCCACATAGTCCAGAAAGAAGAGGGAGTAATGTGCTAACACTGATCGTGACTGCAGCAAGTGGGCAGCAGCACTGAAGCTGAGGTAGGTGAGGGCTGACAAGGCATAGAGACACAGAGGCAGTGAAGAGGCGTCTTGACCCAGGTCATTAGAGGCAGCGAAGAACCAGAAGCGCAGCAGCACAACTGGCACTGCCAGCAAATGTGTCCACACATTTAGTGACTCATTGTGGCGCTGGAAGAGGCTCAGTATATAGCAGCACCATGGCTGACCTGCTGGACGATAACCTGACAAGATGTAGGGCTCGCGGAACAGGACAGGCACATCTGAGGCAGCCACTGTGTCTTGAGGTGATGgcagggaggagagagagtatGACAGGCGGGGAAGGCCAGCCAGCTGCTTTATGCTGAGGGTGAGAGTGCTCAGACGGCCTAAAGCTCCACTTGACATGTTGGGTGGGTTCTGTGAGAAAAtgacaacagcaggtgaaaaaTAAAGGCTGAGCAAACAGGTGTGGCAGAAAAAGGTGTCCTTGGGGACTCCTGTGAAAAAGAAAGATGGACAAAAAGTATGAGGGTAggaaatatttacagtaaaagcaACATATTAGTCATGAGTATCCACTGTACCTGCATTATGGgtctaaaaaaacatacaataaaatgtaaGGTTTAAAGGTTGCATGCAGCTGCTTTGTTGTAATCTACCTGTTTGGGAAAGAACTGTGTTGTTGCAACAGATTGTATTCATTTTCATTTGAGCGCATTTGACAGCTTTACTTTTCTATGGCCTCTTTCCACTTGCCAGtgaagatttttaaaaaagtatacgTTTATTGGATTTAGGTGTCTCAGATTTTCTGGTAAGCATAAAGCATGCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35086 lncRNA upstream 47482 44272294 ~ 44272504 (+) True G26088
TU35026 lncRNA upstream 56784 44256473 ~ 44263202 (+) False G26043
TU35027 lncRNA upstream 58970 44256473 ~ 44261016 (+) True G26043
TU35019 lncRNA upstream 117452 44107941 ~ 44202534 (+) False G26039
TU35012 lncRNA upstream 117452 44117024 ~ 44202534 (+) True G26039
TU35145 lncRNA downstream 40770 44364592 ~ 44367931 (+) True G26121
TU35148 lncRNA downstream 53503 44377325 ~ 44377527 (+) True G26124
TU35252 lncRNA downstream 359366 44683188 ~ 44688403 (+) True G26202
TU35266 lncRNA downstream 412012 44735834 ~ 44736653 (+) True G26216
TU35267 lncRNA downstream 413345 44737167 ~ 44738115 (+) True G26217
XM_007245347.3 mRNA upstream 22267 44281122 ~ 44297719 (+) True pnoc
XM_007245341.3 mRNA upstream 65754 44220915 ~ 44254232 (+) True elp3
XM_022686524.1 mRNA upstream 65819 44219205 ~ 44254167 (+) False elp3
XM_022686496.1 mRNA upstream 124104 44150193 ~ 44195882 (+) False LOC103028637
XM_007245348.3 mRNA downstream 15424 44339246 ~ 44347656 (+) True LOC103041645
XM_007245350.3 mRNA downstream 33454 44357276 ~ 44359403 (+) True LOC103042260
XM_022686599.1 mRNA downstream 93616 44417438 ~ 44460259 (+) True cdc42bpb
XM_007256619.3 mRNA downstream 136863 44460685 ~ 44471931 (+) True vipas39
XM_007256614.3 mRNA downstream 150326 44474148 ~ 44479904 (+) True LOC103046392
TU34777 other upstream 825671 43490786 ~ 43494315 (+) False LOC103033920
TU34767 other upstream 895080 43424392 ~ 43424906 (+) True G25880
TU34766 other upstream 897940 43421771 ~ 43422046 (+) True G25879
TU34713 other upstream 956542 43360469 ~ 43363444 (+) True rps29
XR_002652205.1 other upstream 1803429 42497777 ~ 42516557 (+) True fgfr1op
TU35893 other downstream 2204573 46528395 ~ 46530387 (+) False fau
TU36151 other downstream 3954445 48278267 ~ 48282874 (+) True G26915
TU36153 other downstream 3956943 48280765 ~ 48282874 (+) False G26915
TU36264 other downstream 4231975 48555797 ~ 48558740 (+) True G26995
TU36265 other downstream 4231975 48555797 ~ 48641905 (+) False G26995

Expression Profile