RNA id: TU35145



Basic Information


Item Value
RNA id TU35145
length 620
lncRNA type inter_gene
GC content 0.60
exon number 3
gene id G26121
representative True

Chromosome Information


Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 44364592 ~ 44367931 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence


TAAAGATTTACTGATTTCTTTTAAGAGGGAGAAATGACCAATACATGGTTAATTGGCGGAAGAGTTCaaatgtgtaaaatggactttatGCCAGGTTTTCCCTTAAGGCACGTTGGTCATGACTAAAGTATTAAAATCCACATGGATCAGCTAGAATGTGTAGACGTTAGTCAGCAGCTGATTAAGTCTGGCATGTGTTCTCTATATTCTGTTGTTTACCTTCAGCCTTGTACACTTGCTGGTCTGCAGGAATGGTGCTGATGCAGATGCAGAAGCGGGACACTAGAGGGAGCTCCTTCAGCTTTTCTAGGTAGGCTGTCAGAGTCATTCTGTCTGTTCTTCTTTCTCACTCAGTAAGGAGCAAATTCGCAAACGCTCAGCTTTTATCCTTCTCTCCCCAGAAATATACGTAGTCCTTATCCTgccttccctctctctgtctctctctctctctctcgttctgccTCCCTCAGTGTCTctatgcctctctctctttatagtGGTTTCTCTCAGTATCTGCTGCTCCTCGGATACAGGAGCTCAGCAGCATCGGCAGCAGTACCACTCCTAAAGCATGACATCACCTCCCGGCACTGCCATTGGTGGAGCTCCCATCTCCC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU35127 lncRNA upstream 40770 44319986 ~ 44323822 (+) True G26107
TU35086 lncRNA upstream 92088 44272294 ~ 44272504 (+) True G26088
TU35026 lncRNA upstream 101390 44256473 ~ 44263202 (+) False G26043
TU35027 lncRNA upstream 103576 44256473 ~ 44261016 (+) True G26043
TU35019 lncRNA upstream 162058 44107941 ~ 44202534 (+) False G26039
TU35148 lncRNA downstream 9394 44377325 ~ 44377527 (+) True G26124
TU35252 lncRNA downstream 315257 44683188 ~ 44688403 (+) True G26202
TU35266 lncRNA downstream 367903 44735834 ~ 44736653 (+) True G26216
TU35267 lncRNA downstream 369236 44737167 ~ 44738115 (+) True G26217
TU35278 lncRNA downstream 400226 44768157 ~ 44768487 (+) True G26225
XM_007245350.3 mRNA upstream 5189 44357276 ~ 44359403 (+) True LOC103042260
XM_007245348.3 mRNA upstream 16936 44339246 ~ 44347656 (+) True LOC103041645
XM_007245347.3 mRNA upstream 66873 44281122 ~ 44297719 (+) True pnoc
XM_007245341.3 mRNA upstream 110360 44220915 ~ 44254232 (+) True elp3
XM_022686524.1 mRNA upstream 110425 44219205 ~ 44254167 (+) False elp3
XM_022686599.1 mRNA downstream 49507 44417438 ~ 44460259 (+) True cdc42bpb
XM_007256619.3 mRNA downstream 92754 44460685 ~ 44471931 (+) True vipas39
XM_007256614.3 mRNA downstream 106217 44474148 ~ 44479904 (+) True LOC103046392
XM_022668053.1 mRNA downstream 305199 44673130 ~ 44693172 (+) True LOC111191907
XM_022686638.1 mRNA downstream 342442 44710373 ~ 44727205 (+) True LOC111197225
TU34777 other upstream 870277 43490786 ~ 43494315 (+) False LOC103033920
TU34767 other upstream 939686 43424392 ~ 43424906 (+) True G25880
TU34766 other upstream 942546 43421771 ~ 43422046 (+) True G25879
TU34713 other upstream 1001148 43360469 ~ 43363444 (+) True rps29
XR_002652205.1 other upstream 1848035 42497777 ~ 42516557 (+) True fgfr1op
TU35893 other downstream 2160464 46528395 ~ 46530387 (+) False fau
TU36151 other downstream 3910336 48278267 ~ 48282874 (+) True G26915
TU36153 other downstream 3912834 48280765 ~ 48282874 (+) False G26915
TU36264 other downstream 4187866 48555797 ~ 48558740 (+) True G26995
TU36265 other downstream 4187866 48555797 ~ 48641905 (+) False G26995

Expression Profile