RNA id: TU35252


Basic Information

Item Value
RNA id TU35252
length 210
lncRNA type intronic
GC content 0.52
exon number 2
gene id G26202
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 44683188 ~ 44688403 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGTCACGCCTgatcctgtttcctgtctgtcctcgtgcctgtattgtcccacgtgacccgtgcccctgtgttctgcctgtgattttccattacctcatgtctcatttgtagctccaccccttccccaggtgtttccactcccagtgtgtttcctgtctaGTTATATAGCTTTCCTCTGTCACCTGTCcgtgtcggtctttgcactgtctcc

Function

GO: NA

KEGG:

id description
ko04740 Olfactory transduction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35148 lncRNA upstream 305661 44377325 ~ 44377527 (+) True G26124
TU35145 lncRNA upstream 315257 44364592 ~ 44367931 (+) True G26121
TU35127 lncRNA upstream 359366 44319986 ~ 44323822 (+) True G26107
TU35086 lncRNA upstream 410684 44272294 ~ 44272504 (+) True G26088
TU35026 lncRNA upstream 419986 44256473 ~ 44263202 (+) False G26043
TU35266 lncRNA downstream 47431 44735834 ~ 44736653 (+) True G26216
TU35267 lncRNA downstream 48764 44737167 ~ 44738115 (+) True G26217
TU35278 lncRNA downstream 79754 44768157 ~ 44768487 (+) True G26225
TU35279 lncRNA downstream 80859 44769262 ~ 44770002 (+) True G26226
TU35289 lncRNA downstream 111581 44799984 ~ 44800646 (+) True G26235
XM_007256614.3 mRNA upstream 203284 44474148 ~ 44479904 (+) True LOC103046392
XM_007256619.3 mRNA upstream 211257 44460685 ~ 44471931 (+) True vipas39
XM_022686599.1 mRNA upstream 222929 44417438 ~ 44460259 (+) True cdc42bpb
XM_007245350.3 mRNA upstream 323785 44357276 ~ 44359403 (+) True LOC103042260
XM_007245348.3 mRNA upstream 335532 44339246 ~ 44347656 (+) True LOC103041645
XM_022686638.1 mRNA downstream 21970 44710373 ~ 44727205 (+) True LOC111197225
XM_007229711.3 mRNA downstream 115156 44803559 ~ 44808849 (+) True wdcp
XM_022686640.1 mRNA downstream 115174 44803577 ~ 44808849 (+) False wdcp
XM_022686646.1 mRNA downstream 184061 44872464 ~ 44960236 (+) False atad2b
XM_022686643.1 mRNA downstream 184062 44872465 ~ 44960236 (+) True atad2b
TU34777 other upstream 1188873 43490786 ~ 43494315 (+) False LOC103033920
TU34767 other upstream 1258282 43424392 ~ 43424906 (+) True G25880
TU34766 other upstream 1261142 43421771 ~ 43422046 (+) True G25879
TU34713 other upstream 1319744 43360469 ~ 43363444 (+) True rps29
XR_002652205.1 other upstream 2166631 42497777 ~ 42516557 (+) True fgfr1op
TU35893 other downstream 1839992 46528395 ~ 46530387 (+) False fau
TU36151 other downstream 3589864 48278267 ~ 48282874 (+) True G26915
TU36153 other downstream 3592362 48280765 ~ 48282874 (+) False G26915
TU36264 other downstream 3867394 48555797 ~ 48558740 (+) True G26995
TU36265 other downstream 3867394 48555797 ~ 48641905 (+) False G26995

Expression Profile